Basic Information:

  VIRBase ID:  

HHID00020885

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-326-3p:  MIMAT0000559          Rela:  NM_009045     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-326-3p	Rela
miRBase Accession/Entrez ID	MIMAT0000559	19697
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	p6//p65//p65 NF-kappa B//p65 NFkB

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Rela	chr19:5642274(+) A-I      intronic chr19:5642278(+) A-I      intronic chr19:5642269(+) A-I      intronic chr19:5642271(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Rela	chr19:5642269(+) A-I intron -    22524474 chr19:5642271(+) A-I intron -    22524474 chr19:5642274(+) A-I intron -    22524474 chr19:5642278(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rela	chr19:5637506-5637507(+) m6A 5'UTR       25412662//25569111 chr19:5637512-5637513(+) m6A 5'UTR       25412662//25569111 chr19:5637560-5637561(+) m6A 5'UTR       25412662//25569111 chr19:5637825-5637826(+) m6A 5'UTR       25569111 chr19:5638684-5638685(+) m6A CDS       24981863 chr19:5638871-5638872(+) m6A CDS       24981863 chr19:5638878-5638879(+) m6A CDS       24981863 chr19:5641558-5641559(+) m6A CDS       25569111 chr19:5641670-5641671(+) m6A CDS       25569111 chr19:5645359-5645360(+) m6A CDS       25412662//24981863//25569111 chr19:5645368-5645369(+) m6A CDS       25412662//24981863//25569111 chr19:5645389-5645390(+) m1A CDS       26863196 chr19:5645522-5645523(+) m6A CDS       25412662//24981863 chr19:5645563-5645564(+) m6A CDS       25412662//24981863 chr19:5646889-5646890(+) m6A CDS       25412662//24981863//25569111 chr19:5646936-5646937(+) m6A CDS       25412662//24981863//25569111 chr19:5647108-5647109(+) m6A CDS       25683224//25412662//24981863//25569111 chr19:5647138-5647139(+) m6A CDS       25683224//25412662//24981863//25569111 chr19:5647156-5647157(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr19:5647171-5647172(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr19:5647198-5647199(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22575960 chr19:5647320-5647321(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr19:5647357-5647358(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr19:5647375-5647376(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr19:5647381-5647382(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr19:5647618-5647619(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr19:5647661-5647662(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr19:5647712-5647713(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22575960 chr19:5647919-5647920(+) m6A 3'UTR       25412662//24981863 chr19:5647971-5647972(+) m6A 3'UTR       25412662//24981863 chr19:5648016-5648017(+) m6A 3'UTR       25569111 chr19:5648057-5648058(+) m6A 3'UTR       25569111 chr19:5648083-5648084(+) m6A 3'UTR       25569111 chr19:5648106-5648107(+) m6A 3'UTR       25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-326-3p	Exosome Mast cells     17486113 Exosome B6 BMDCs     22031862 Exosome Bone marrow-derived macrophages     25159140

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-326-3p
Interactor2: Rela

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).