Basic Information:

  VIRBase ID:  

HHID00020473

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-122-5p:  MIMAT0000246          Rel:  NM_009044     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-122-5p	Rel
miRBase Accession/Entrez ID	MIMAT0000246	19696
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	c-R//c-Rel

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rel	chr11:23737663-23737664(-) m6A 3'UTR       24981863 chr11:23737677-23737678(-) m6A 3'UTR       24981863 chr11:23739678-23739679(-) m6A 3'UTR       24981863 chr11:23739687-23739688(-) m6A 3'UTR       24981863 chr11:23742255-23742256(-) m6A 3'UTR       24981863 chr11:23742381-23742382(-) m6A CDS       24981863 chr11:23742421-23742422(-) m6A CDS       24981863//25569111 chr11:23742513-23742514(-) m6A CDS       25683224//25456834//24981863//25569111 chr11:23742520-23742521(-) m6A CDS       25683224//25456834//24981863//25569111 chr11:23742553-23742554(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr11:23742576-23742577(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr11:23742592-23742593(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr11:23742809-23742810(-) m6A CDS       25456834//24981863//25569111//22608085 chr11:23742966-23742967(-) m6A CDS       24981863//25569111 chr11:23743033-23743034(-) m6A CDS       24981863 chr11:23761029-23761030(-) m6A CDS       24981863 chr11:23761040-23761041(-) m6A CDS       24981863 chr11:23761123-23761124(-) m6A CDS       24981863//25569111 chr11:23770871-23770872(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr11:23770918-23770919(-) m6A 5'UTR       25412662//24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-122-5p	Cytoplasm Hepatocytes     29253196 Exosome Serum     28160157 Exosome B6 BMDCs     22031862 Mitochondrion Liver tissue     27396686 Mitochondrion Liver cells     27563705 Mitochondrion Liver tissue     20733615 Nucleus Hepatic carcinoma cells (Hepa1-6)|Hepatocytes     29253196 Nucleus Liver cells     21862971

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-122-5p
Interactor2: Rel

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).