Basic Information:

  VIRBase ID:  

HHID00020467

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-122-5p:  MIMAT0000246          Csf1:  NM_001113530     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-122-5p	Csf1
miRBase Accession/Entrez ID	MIMAT0000246	12977
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	C87615//Csf//CSF-//Csfm//M-CS//MCSF//op

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Csf1	chr3:107741171-107741172(-) m6A 3'UTR       24981863//25569111 chr3:107741179-107741180(-) m6A 3'UTR       24981863//25569111 chr3:107741225-107741226(-) m6A 3'UTR       24981863//25569111 chr3:107741335-107741336(-) m6A 3'UTR       24981863//25569111 chr3:107741351-107741352(-) m6A 3'UTR       24981863//25569111 chr3:107741380-107741381(-) m6A 3'UTR       24981863//25569111 chr3:107741385-107741386(-) m6A 3'UTR       24981863//25569111 chr3:107741390-107741391(-) m6A 3'UTR       24981863//25569111 chr3:107741398-107741399(-) m6A 3'UTR       24981863//25569111 chr3:107741443-107741444(-) m6A 3'UTR       24981863//25569111 chr3:107741480-107741481(-) m6A 3'UTR       24981863//25569111 chr3:107741489-107741490(-) m6A 3'UTR       24981863//25569111 chr3:107741505-107741506(-) m6A 3'UTR       24981863//25569111 chr3:107741828-107741829(-) m6A 3'UTR       24981863//25569111 chr3:107741877-107741878(-) m6A 3'UTR       24981863//25569111 chr3:107741917-107741918(-) m6A 3'UTR       25683224//24981863//25569111 chr3:107742037-107742038(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr3:107742164-107742165(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr3:107742340-107742341(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742353-107742354(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742457-107742458(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742488-107742489(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742507-107742508(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742659-107742660(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742700-107742701(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742710-107742711(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742741-107742742(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742779-107742780(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742785-107742786(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742813-107742814(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742825-107742826(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742831-107742832(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742866-107742867(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107742976-107742977(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107743026-107743027(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr3:107743100-107743101(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr3:107743110-107743111(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr3:107743131-107743132(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr3:107745614-107745615(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111 chr3:107745773-107745774(-) m6A 3'UTR//intron       25569111 chr3:107745822-107745823(-) m6A 3'UTR//intron       24981863//25569111 chr3:107746750-107746751(-) m6A CDS       25683224//24981863//25569111 chr3:107746763-107746764(-) m6A CDS       25683224//24981863//25569111 chr3:107747109-107747110(-) m6A CDS       25683224//24981863//25569111 chr3:107747140-107747141(-) m6A CDS       25683224//24981863//25569111 chr3:107747148-107747149(-) m6A CDS       25683224//24981863//25569111 chr3:107748110-107748111(-) m6A exon//intron       25569111 chr3:107748127-107748128(-) m6A exon//intron       25569111 chr3:107748143-107748144(-) m6A exon//intron       24981863//25569111 chr3:107748535-107748536(-) m6A CDS//exon//intron       25683224//24981863//25569111 chr3:107748563-107748564(-) m6A CDS//exon//intron       25683224//24981863//25569111//22575960 chr3:107748587-107748588(-) m6A CDS//exon//intron       25683224//24981863//25569111//22575960 chr3:107748600-107748601(-) m6A CDS//exon//intron       25683224//24981863//25569111//22608085//22575960 chr3:107748610-107748611(-) m6A CDS//exon//intron       25683224//24981863//25569111//22608085//22575960 chr3:107748631-107748632(-) m6A CDS//exon//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr3:107748655-107748656(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107748699-107748700(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107748707-107748708(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr3:107748838-107748839(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107748886-107748887(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107748901-107748902(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107748910-107748911(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107748935-107748936(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:107748979-107748980(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr3:107749028-107749029(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr3:107750345-107750346(-) m6A CDS//exon       25683224//24981863//25569111 chr3:107750360-107750361(-) m6A CDS//exon       25683224//24981863//25569111 chr3:107750366-107750367(-) m6A CDS//exon       25683224//24981863//25569111 chr3:107750388-107750389(-) m6A CDS//exon       25683224//24981863//25569111 chr3:107750402-107750403(-) m6A CDS//exon       25683224//24981863//25569111 chr3:107750433-107750434(-) m6A CDS//exon       25683224//25569111 chr3:107750445-107750446(-) m6A CDS//exon       25683224//25569111 chr3:107750714-107750715(-) m6A CDS//intron       25683224//25569111 chr3:107753735-107753736(-) m6A CDS//exon       24981863 chr3:107753750-107753751(-) m6A CDS//exon       24981863 chr3:107753768-107753769(-) m6A CDS//exon       24981863 chr3:107753785-107753786(-) m6A CDS//exon       24981863 chr3:107753825-107753826(-) m6A CDS//exon       24981863 chr3:107753841-107753842(-) m6A CDS//exon       24981863 chr3:107753855-107753856(-) m6A CDS//exon       24981863 chr3:107756990-107756991(-) m6A CDS//intron       25569111 chr3:107756996-107756997(-) m6A CDS//intron       25569111 chr3:107757003-107757004(-) m6A CDS//intron       25569111 chr3:107760076-107760077(-) m6A 5'UTR//exon       25412662//25569111 chr3:107760104-107760105(-) m6A 5'UTR//exon       25412662//25569111 chr3:107760169-107760170(-) m6A 5'UTR//exon       25412662//25569111 chr3:107760296-107760297(-) m6A 5'UTR       24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-122-5p	Cytoplasm Hepatocytes     29253196 Exosome Serum     28160157 Exosome B6 BMDCs     22031862 Mitochondrion Liver tissue     27396686 Mitochondrion Liver cells     27563705 Mitochondrion Liver tissue     20733615 Nucleus Hepatic carcinoma cells (Hepa1-6)|Hepatocytes     29253196 Nucleus Liver cells     21862971

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-122-5p
Interactor2: Csf1

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).