Basic Information:

  VIRBase ID:  

HHID00020193

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-24-3p:  MIMAT0000219          Ifih1:  NM_001164477     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-24-3p	Ifih1
miRBase Accession/Entrez ID	MIMAT0000219	71586
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	9130009C22Rik//Heli//Helicard//Hlcd//MDA//MDA-//MDA5//RLR-2

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Ifih1	chr2:62605614-62605615(-) m6A CDS       24981863 chr2:62605627-62605628(-) m6A CDS       24981863 chr2:62605644-62605645(-) m6A CDS       24981863 chr2:62605666-62605667(-) m6A CDS       24981863 chr2:62605677-62605678(-) m6A CDS       24981863 chr2:62606220-62606221(-) m6A CDS       24981863 chr2:62606339-62606340(-) m6A CDS       24981863 chr2:62606415-62606416(-) m6A CDS       24981863 chr2:62607014-62607015(-) m6A CDS       24981863 chr2:62617440-62617441(-) m6A CDS//exon       24981863 chr2:62634594-62634595(-) m6A exon//intron       24981863 chr2:62634608-62634609(-) m6A exon//intron       24981863 chr2:62634614-62634615(-) m6A exon//intron       24981863 chr2:62634621-62634622(-) m6A exon//intron       24981863 chr2:62634628-62634629(-) m6A exon//intron       24981863 chr2:62634850-62634851(-) m6A exon//intron       24981863 chr2:62634904-62634905(-) m6A exon//intron       24981863 chr2:62634962-62634963(-) m6A exon//intron       24981863 chr2:62634979-62634980(-) m6A exon//intron       24981863 chr2:62634988-62634989(-) m6A exon//intron       24981863 chr2:62635004-62635005(-) m6A exon//intron       24981863 chr2:62639389-62639390(-) m6A CDS//exon       24981863 chr2:62639424-62639425(-) m6A CDS//exon       24981863 chr2:62639481-62639482(-) m6A CDS//exon       24981863//25569111 chr2:62645487-62645488(-) m6A CDS//exon       24981863//25569111 chr2:62645504-62645505(-) m6A CDS//exon       24981863//25569111 chr2:62645523-62645524(-) m6A CDS//exon       24981863//25569111 chr2:62645550-62645551(-) m6A CDS//exon       24981863//25569111 chr2:62645605-62645606(-) m6A CDS//exon       24981863//25569111 chr2:62645642-62645643(-) m6A CDS//exon       24981863//25569111 chr2:62645723-62645724(-) m6A CDS//exon       24981863//25569111 chr2:62645750-62645751(-) m6A CDS//exon       24981863//25569111 chr2:62645806-62645807(-) m6A CDS//exon       24981863//25569111 chr2:62645832-62645833(-) m6A CDS//exon       24981863//25569111 chr2:62645904-62645905(-) m6A CDS//exon       24981863//25569111 chr2:62645937-62645938(-) m6A 5'UTR//exon       24981863//25569111 chr2:62646213-62646214(-) m6A exon       24981863 chr2:62646219-62646220(-) m6A exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-24-3p	Axon DRG neurons     24381269 Exosome Conditioned medium of E13 SMG     28041903 Exosome Serum     28160157 Exosome Mast cells     17486113 Exosome B6 BMDCs     22031862 Exosome Mouse hypothalamic neuronal cell line (GT1-7)     22965126 Exosome Bone marrow-derived macrophages     25159140 Mitochondrion Heart tissue (subsarcolemmal and interfibrillar)     26377859 Nucleus Spermatocytes     18204908 Nucleus Liver cells     21862971

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-24-3p
Interactor2: Ifih1

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).