Basic Information:

  VIRBase ID:  

HHID00020182

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-24-3p:  MIMAT0000219          Pim1:  NM_008842     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-24-3p	Pim1
miRBase Accession/Entrez ID	MIMAT0000219	18712
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	Pim//Pim-1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Pim1	chr17:29490950-29490951(+) m6A 5'UTR       25683224//25412662//24981863//25456834//25569111 chr17:29491544-29491545(+) m6A CDS       25683224//25412662//25569111 chr17:29491566-29491567(+) m6A CDS       25683224//25569111 chr17:29491719-29491720(+) m6A CDS       25683224//25412662//24981863//25569111 chr17:29491738-29491739(+) m6A CDS       25683224//25412662//24981863//25569111 chr17:29491746-29491747(+) m6A CDS       25683224//25412662//24981863//25569111 chr17:29491795-29491796(+) m6A CDS       25683224//25412662//25569111 chr17:29491806-29491807(+) m6A CDS       25683224//25412662//25569111 chr17:29491848-29491849(+) m6A CDS       25683224//25412662//25569111 chr17:29491938-29491939(+) m6A CDS       25683224//25412662//25569111 chr17:29491972-29491973(+) m6A CDS       25683224//25569111 chr17:29492007-29492008(+) m6A CDS       25683224//25569111 chr17:29492022-29492023(+) m6A CDS       25683224//25569111 chr17:29493723-29493724(+) m6A CDS       25683224//25569111 chr17:29493885-29493886(+) m6A CDS       25569111 chr17:29494626-29494627(+) m6A CDS       25569111 chr17:29494661-29494662(+) m6A CDS       25569111 chr17:29494772-29494773(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr17:29494815-29494816(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr17:29494836-29494837(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr17:29494859-29494860(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr17:29494898-29494899(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr17:29494944-29494945(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr17:29495024-29495025(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr17:29495042-29495043(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr17:29495092-29495093(+) m6A 3'UTR       25456834//24981863//25569111 chr17:29495115-29495116(+) m6A 3'UTR       25456834//24981863//25569111 chr17:29495174-29495175(+) m6A 3'UTR       25456834//24981863//25569111 chr17:29495203-29495204(+) m6A 3'UTR       24981863//25569111 chr17:29495231-29495232(+) m6A 3'UTR       24981863//25569111 chr17:29495373-29495374(+) m6A 3'UTR       24981863 chr17:29495412-29495413(+) m6A 3'UTR       24981863 chr17:29495418-29495419(+) m6A 3'UTR       24981863 chr17:29495448-29495449(+) m6A 3'UTR       24981863//25456834 chr17:29495455-29495456(+) m6A 3'UTR       24981863//25456834 chr17:29495464-29495465(+) m6A 3'UTR       24981863//25456834 chr17:29495475-29495476(+) m6A 3'UTR       24981863//25456834 chr17:29495480-29495481(+) m6A 3'UTR       24981863//25456834 chr17:29495528-29495529(+) m6A 3'UTR       24981863//25456834 chr17:29495862-29495863(+) m6A 3'UTR       25569111 chr17:29495943-29495944(+) m6A 3'UTR       25683224//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-24-3p	Axon DRG neurons     24381269 Exosome Conditioned medium of E13 SMG     28041903 Exosome Serum     28160157 Exosome Mast cells     17486113 Exosome B6 BMDCs     22031862 Exosome Mouse hypothalamic neuronal cell line (GT1-7)     22965126 Exosome Bone marrow-derived macrophages     25159140 Mitochondrion Heart tissue (subsarcolemmal and interfibrillar)     26377859 Nucleus Spermatocytes     18204908 Nucleus Liver cells     21862971
	Pim1	Axon Motor neurons     24152552

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-24-3p
Interactor2: Pim1

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).