Basic Information:

  VIRBase ID:  

HHID00020168

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-24-3p:  MIMAT0000219          Il10ra:  NR_136903     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-24-3p	Il10ra
miRBase Accession/Entrez ID	MIMAT0000219	16154
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	AW553859//CDw210//CDw210a//Il//IL-10R1//IL-10RA//Il10r//mIL-//mIL-10R

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Il10ra	chr9:45254144-45254145(-) m6A 3'UTR       24981863//22608085//22575960 chr9:45254156-45254157(-) m6A 3'UTR       24981863//22608085//22575960 chr9:45254175-45254176(-) m6A 3'UTR       24981863//22608085//22575960 chr9:45254234-45254235(-) m6A 3'UTR       24981863//22608085 chr9:45254263-45254264(-) m6A 3'UTR       24981863//22608085 chr9:45254373-45254374(-) m6A 3'UTR       24981863 chr9:45254519-45254520(-) m6A 3'UTR       24981863 chr9:45255205-45255206(-) m6A 3'UTR       24981863 chr9:45255249-45255250(-) m6A 3'UTR       24981863 chr9:45255288-45255289(-) m6A 3'UTR       24981863 chr9:45255430-45255431(-) m6A 3'UTR       24981863 chr9:45255620-45255621(-) m6A 3'UTR//CDS       24981863//22608085//22575960 chr9:45255634-45255635(-) m6A 3'UTR//CDS       24981863//22608085//22575960 chr9:45255724-45255725(-) m6A 3'UTR//CDS       24981863//22608085//22575960 chr9:45255735-45255736(-) m6A 3'UTR//CDS       24981863//22608085//22575960 chr9:45255772-45255773(-) m6A 3'UTR//CDS       24981863//22608085//22575960 chr9:45255838-45255839(-) m6A 3'UTR//CDS       24981863//22608085//22575960 chr9:45255922-45255923(-) m6A 3'UTR//CDS       25456834//24981863//22608085//22575960 chr9:45255956-45255957(-) m6A 3'UTR//CDS       25456834//24981863//22608085//22575960 chr9:45255979-45255980(-) m6A 3'UTR//CDS       25456834//24981863//22608085//22575960 chr9:45256043-45256044(-) m6A 3'UTR//CDS       25456834//24981863//22608085//22575960 chr9:45256076-45256077(-) m6A 3'UTR//CDS       24981863//22608085//22575960 chr9:45256160-45256161(-) m6A 3'UTR//CDS       24981863//22608085//22575960 chr9:45256169-45256170(-) m6A 3'UTR//CDS       24981863//22608085//22575960 chr9:45256215-45256216(-) m6A 3'UTR//CDS       24981863//22608085//22575960 chr9:45256266-45256267(-) m6A 3'UTR//CDS       24981863//22608085//22575960 chr9:45256279-45256280(-) m6A 3'UTR//CDS       24981863//22608085//22575960 chr9:45256325-45256326(-) m6A 3'UTR//CDS       24981863//22608085 chr9:45256364-45256365(-) m6A 3'UTR//CDS       24981863//22608085 chr9:45256389-45256390(-) m6A 3'UTR//CDS       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-24-3p	Axon DRG neurons     24381269 Exosome Conditioned medium of E13 SMG     28041903 Exosome Serum     28160157 Exosome Mast cells     17486113 Exosome B6 BMDCs     22031862 Exosome Mouse hypothalamic neuronal cell line (GT1-7)     22965126 Exosome Bone marrow-derived macrophages     25159140 Mitochondrion Heart tissue (subsarcolemmal and interfibrillar)     26377859 Nucleus Spermatocytes     18204908 Nucleus Liver cells     21862971

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-24-3p
Interactor2: Il10ra

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).