Basic Information:

  VIRBase ID:  

HHID00020165

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-24-3p:  MIMAT0000219          Egr1:  NM_007913     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-24-3p	Egr1
miRBase Accession/Entrez ID	MIMAT0000219	13653
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	A530045N19Rik//egr//Egr-//Egr-1//ETR10//ETR103//Krox//Krox-//Krox-1//Krox-24//Krox24//NG//NGF//NGF1//NGF1-A//NGFI-A//NGFIA//TI//TIS8//Zen//Zenk//Zfp-//Zfp-6//Zif26//Zif268

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Egr1	chr18:34860585-34860586(+) m6A 5'UTR       25412662 chr18:34860749-34860750(+) m6A 5'UTR       25412662 chr18:34860832-34860833(+) m6A 5'UTR       25412662 chr18:34861173-34861174(+) m6A 5'UTR       25412662//24981863//25456834//25569111 chr18:34861226-34861227(+) m6A 5'UTR       25412662//24981863//25456834//25569111 chr18:34861576-34861577(+) m6A CDS       25683224//25412662//24981863//25569111 chr18:34861589-34861590(+) m6A CDS       25683224//25412662//24981863//25569111 chr18:34861647-34861648(+) m6A CDS       25683224//25412662//24981863//25569111 chr18:34861760-34861761(+) m6A CDS       25683224//25412662//24981863//25569111 chr18:34862612-34862613(+) m6A CDS       25683224//25412662//24981863//25569111 chr18:34862947-34862948(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr18:34862968-34862969(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr18:34862995-34862996(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr18:34863067-34863068(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr18:34863110-34863111(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr18:34863150-34863151(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr18:34863419-34863420(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr18:34863427-34863428(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr18:34863439-34863440(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr18:34863724-34863725(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr18:34863750-34863751(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr18:34863804-34863805(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr18:34863904-34863905(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr18:34863979-34863980(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr18:34864015-34864016(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr18:34864095-34864096(+) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085 chr18:34864142-34864143(+) m6A 3'UTR       25683224//24981863//25569111//22608085 chr18:34864288-34864289(+) m6A 3'UTR       25683224//24981863//25569111 chr18:34864582-34864583(+) m6A 3'UTR       25683224//25412662//24981863//25569111 chr18:34864704-34864705(+) m6A 3'UTR       25683224//25412662//24981863//25569111 chr18:34864716-34864717(+) m6A 3'UTR       25683224//24981863//25569111 chr18:34864740-34864741(+) m6A 3'UTR       25683224//24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-24-3p	Axon DRG neurons     24381269 Exosome Conditioned medium of E13 SMG     28041903 Exosome Serum     28160157 Exosome Mast cells     17486113 Exosome B6 BMDCs     22031862 Exosome Mouse hypothalamic neuronal cell line (GT1-7)     22965126 Exosome Bone marrow-derived macrophages     25159140 Mitochondrion Heart tissue (subsarcolemmal and interfibrillar)     26377859 Nucleus Spermatocytes     18204908 Nucleus Liver cells     21862971
	Egr1	Cytoplasm Cortical neurons     28515681 Nucleus Cortical neurons     28515681

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-24-3p
Interactor2: Egr1

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).