Basic Information:

  VIRBase ID:  

HHID00020161

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-24-3p:  MIMAT0000219          Ccr5:  NM_009917     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-24-3p	Ccr5
miRBase Accession/Entrez ID	MIMAT0000219	12774
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	AM4-7//CD195//Cmkbr//Cmkbr5

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Ccr5	chr9:124124444-124124445(+) m6A CDS//intron       24981863 chr9:124124659-124124660(+) m6A CDS//intron       24981863 chr9:124124949-124124950(+) m6A CDS//intron       24981863 chr9:124125111-124125112(+) m6A CDS//exon//intron       24981863//22608085//22575960 chr9:124125161-124125162(+) m6A CDS//exon//intron       24981863//22608085//22575960 chr9:124125188-124125189(+) m6A CDS//exon//intron       24981863//22608085//22575960 chr9:124125193-124125194(+) m6A CDS//exon//intron       24981863//22608085//22575960 chr9:124125216-124125217(+) m6A CDS//exon//intron       24981863//22608085//22575960 chr9:124125244-124125245(+) m6A CDS//exon//intron       24981863//22608085//22575960 chr9:124125308-124125309(+) m6A CDS//intron       24981863//22608085 chr9:124125355-124125356(+) m6A CDS//intron       24981863 chr9:124125401-124125402(+) m6A CDS//intron       24981863 chr9:124125573-124125574(+) m6A 3'UTR//intron       24981863 chr9:124125648-124125649(+) m6A 3'UTR//intron       24981863//22608085 chr9:124125687-124125688(+) m6A 3'UTR//intron       24981863//22608085 chr9:124125822-124125823(+) m6A 3'UTR//intron       24981863 chr9:124125856-124125857(+) m6A 3'UTR//intron       24981863 chr9:124125890-124125891(+) m6A 3'UTR//intron       24981863 chr9:124125929-124125930(+) m6A 3'UTR//intron       24981863 chr9:124126034-124126035(+) m6A 3'UTR//intron       24981863 chr9:124126056-124126057(+) m6A 3'UTR//intron       24981863 chr9:124126064-124126065(+) m6A 3'UTR//intron       24981863 chr9:124126157-124126158(+) m6A 3'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-24-3p	Axon DRG neurons     24381269 Exosome Conditioned medium of E13 SMG     28041903 Exosome Serum     28160157 Exosome Mast cells     17486113 Exosome B6 BMDCs     22031862 Exosome Mouse hypothalamic neuronal cell line (GT1-7)     22965126 Exosome Bone marrow-derived macrophages     25159140 Mitochondrion Heart tissue (subsarcolemmal and interfibrillar)     26377859 Nucleus Spermatocytes     18204908 Nucleus Liver cells     21862971

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-24-3p
Interactor2: Ccr5

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).