Basic Information:

  VIRBase ID:  

HHID00019897

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-132-3p:  MIMAT0000144          Havcr2:  NM_134250     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-132-3p	Havcr2
miRBase Accession/Entrez ID	MIMAT0000144	171285
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	Tim//TIM-//TIM-3//Tim3//Timd//Timd3

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Havcr2	chr11:46456404-46456405(+) m6A CDS//intron       24981863 chr11:46456518-46456519(+) m6A CDS       24981863 chr11:46456571-46456572(+) m6A CDS       24981863 chr11:46456582-46456583(+) m6A CDS       24981863 chr11:46459069-46459070(+) m6A CDS       24981863 chr11:46459082-46459083(+) m6A CDS       24981863 chr11:46459105-46459106(+) m6A CDS       24981863 chr11:46466873-46466874(+) m6A CDS       24981863 chr11:46466879-46466880(+) m6A CDS       24981863 chr11:46466909-46466910(+) m6A CDS       24981863 chr11:46479456-46479457(+) m6A 3'UTR       24981863 chr11:46479513-46479514(+) m6A 3'UTR       24981863 chr11:46479689-46479690(+) m6A 3'UTR       24981863 chr11:46479949-46479950(+) m6A 3'UTR       24981863 chr11:46480002-46480003(+) m6A 3'UTR       24981863 chr11:46480031-46480032(+) m6A 3'UTR       24981863 chr11:46480039-46480040(+) m6A 3'UTR       24981863 chr11:46480067-46480068(+) m6A 3'UTR       24981863 chr11:46480117-46480118(+) m6A 3'UTR       24981863 chr11:46480159-46480160(+) m6A 3'UTR       24981863 chr11:46480453-46480454(+) m6A 3'UTR       24981863 chr11:46480475-46480476(+) m6A 3'UTR       24981863 chr11:46480580-46480581(+) m6A 3'UTR       24981863 chr11:46480637-46480638(+) m6A 3'UTR       25412662//24981863//25569111 chr11:46480653-46480654(+) m6A 3'UTR       25412662//24981863//25569111 chr11:46480680-46480681(+) m6A 3'UTR       25412662//24981863//25569111//22608085 chr11:46480690-46480691(+) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085 chr11:46480714-46480715(+) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085 chr11:46480738-46480739(+) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085 chr11:46480754-46480755(+) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085 chr11:46480814-46480815(+) m6A 3'UTR       24981863//22608085 chr11:46480848-46480849(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-132-3p	Axon DRG neurons     24381269 Dendrite Hippocampal neuroprogenitors     20506192 Exosome Conditioned medium of E13 SMG     28041903 Exosome B6 BMDCs     22031862 Exosome Mouse hypothalamic neuronal cell line (GT1-7)     22965126 Exosome Bone marrow-derived macrophages     25159140
	Havcr2	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-132-3p
Interactor2: Havcr2

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).