Basic Information:

  VIRBase ID:  

HHID00019894

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-132-3p:  MIMAT0000144          Lyn:  NM_001111096     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-132-3p	Lyn
miRBase Accession/Entrez ID	MIMAT0000144	17096
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	AA407514//Hck-2//p53Lyn//p56Lyn

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Lyn	chr4:3678248-3678249(+) m6A 5'UTR//exon       25683224//24981863//22608085 chr4:3678304-3678305(+) m6A 5'UTR//exon       25683224//24981863 chr4:3678347-3678348(+) m6A 5'UTR//exon       25683224//24981863 chr4:3748685-3748686(+) m6A CDS       25683224//22608085 chr4:3748712-3748713(+) m6A CDS       25683224//22608085 chr4:3780946-3780947(+) m6A CDS//exon       25683224//22608085 chr4:3782995-3782996(+) m6A CDS//exon       25683224//22608085 chr4:3789746-3789747(+) m6A CDS//intron       25683224//22608085 chr4:3789804-3789805(+) m6A CDS//intron       25683224//24981863 chr4:3789955-3789956(+) m6A 3'UTR//intron       25683224//24981863//22575960 chr4:3790016-3790017(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr4:3790067-3790068(+) m6A 3'UTR//intron       25683224//25456834//24981863//22608085//22575960 chr4:3790113-3790114(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr4:3790131-3790132(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr4:3790192-3790193(+) m6A 3'UTR//intron       25683224//25456834//24981863//22608085//22575960 chr4:3790224-3790225(+) m6A 3'UTR//intron       25683224//25456834//24981863//22608085//22575960 chr4:3790229-3790230(+) m6A 3'UTR//intron       25683224//25456834//24981863//22608085//22575960 chr4:3790248-3790249(+) m6A 3'UTR//intron       25683224//25456834//24981863//22608085//22575960 chr4:3790307-3790308(+) m6A 3'UTR//intron       25683224//24981863//22608085 chr4:3790357-3790358(+) m6A 3'UTR//intron       25683224//24981863//22608085//22575960 chr4:3790444-3790445(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr4:3790452-3790453(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr4:3790480-3790481(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr4:3790536-3790537(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr4:3790547-3790548(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr4:3790580-3790581(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr4:3790698-3790699(+) m6A 3'UTR//intron       25683224//24981863//25569111//22608085 chr4:3790719-3790720(+) m6A 3'UTR//intron       25683224//24981863//25569111//22608085 chr4:3790729-3790730(+) m6A 3'UTR//intron       25683224//24981863//25569111//22608085 chr4:3790777-3790778(+) m6A 3'UTR//intron       25683224//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-132-3p	Axon DRG neurons     24381269 Dendrite Hippocampal neuroprogenitors     20506192 Exosome Conditioned medium of E13 SMG     28041903 Exosome B6 BMDCs     22031862 Exosome Mouse hypothalamic neuronal cell line (GT1-7)     22965126 Exosome Bone marrow-derived macrophages     25159140

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-132-3p
Interactor2: Lyn

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).