Basic Information:

  VIRBase ID:  

HHID00019890

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-132-3p:  MIMAT0000144          Ccr2:  NM_009915     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-132-3p	Ccr2
miRBase Accession/Entrez ID	MIMAT0000144	12772
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	CC-CKR-//Cc-ckr-2//CCR//Ccr2a//Ccr2b//CKR//Ckr2//Ckr2a//Ckr2b//Cmkbr//Cmkbr2//mJe-r

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Ccr2	chr9:124102113-124102114(+) m6A 5'UTR       24981863 chr9:124103399-124103400(+) m6A 5'UTR//intron       24981863 chr9:124103417-124103418(+) m6A 5'UTR//intron       24981863 chr9:124103423-124103424(+) m6A 5'UTR//intron       24981863 chr9:124103481-124103482(+) m6A 5'UTR//intron       24981863 chr9:124103502-124103503(+) m6A 5'UTR//intron       24981863 chr9:124103615-124103616(+) m6A 5'UTR//intron       24981863 chr9:124103678-124103679(+) m6A 5'UTR//intron       24981863 chr9:124103685-124103686(+) m6A 5'UTR//intron       24981863 chr9:124103767-124103768(+) m6A 5'UTR//intron       24981863 chr9:124103808-124103809(+) m6A 5'UTR//intron       24981863 chr9:124106179-124106180(+) m6A CDS       24981863 chr9:124106268-124106269(+) m6A CDS       24981863 chr9:124106329-124106330(+) m6A CDS       24981863 chr9:124106491-124106492(+) m6A CDS       24981863 chr9:124106573-124106574(+) m6A CDS       24981863 chr9:124106596-124106597(+) m6A CDS       24981863 chr9:124106712-124106713(+) m6A CDS       24981863 chr9:124106737-124106738(+) m6A CDS       24981863 chr9:124108166-124108167(+) m6A 3'UTR//intron       24981863 chr9:124108196-124108197(+) m6A 3'UTR//intron       24981863 chr9:124108201-124108202(+) m6A 3'UTR//intron       24981863 chr9:124108217-124108218(+) m6A 3'UTR//intron       24981863 chr9:124108250-124108251(+) m6A 3'UTR//intron       24981863 chr9:124108276-124108277(+) m6A 3'UTR//intron       24981863 chr9:124108356-124108357(+) m6A 3'UTR//intron       24981863 chr9:124108407-124108408(+) m6A 3'UTR//intron       24981863 chr9:124108414-124108415(+) m6A 3'UTR//intron       24981863 chr9:124108520-124108521(+) m6A 3'UTR//intron       24981863 chr9:124108530-124108531(+) m6A 3'UTR//intron       24981863 chr9:124112900-124112901(+) m6A 3'UTR       24981863 chr9:124112925-124112926(+) m6A 3'UTR       24981863 chr9:124113058-124113059(+) m6A 3'UTR       24981863 chr9:124113095-124113096(+) m6A 3'UTR       24981863 chr9:124113207-124113208(+) m6A 3'UTR       24981863 chr9:124113308-124113309(+) m6A 3'UTR       24981863 chr9:124113315-124113316(+) m6A 3'UTR       24981863 chr9:124113351-124113352(+) m6A 3'UTR       24981863 chr9:124113359-124113360(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-132-3p	Axon DRG neurons     24381269 Dendrite Hippocampal neuroprogenitors     20506192 Exosome Conditioned medium of E13 SMG     28041903 Exosome B6 BMDCs     22031862 Exosome Mouse hypothalamic neuronal cell line (GT1-7)     22965126 Exosome Bone marrow-derived macrophages     25159140

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-132-3p
Interactor2: Ccr2

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).