Basic Information:

  VIRBase ID:  

HHID00019815

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-124-3p:  MIMAT0000134          Trib1:  NM_144549     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-124-3p	Trib1
miRBase Accession/Entrez ID	MIMAT0000134	211770
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	A530090O15Rik//Trb//TRB-1//Trb1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Trib1	chr15:59648781-59648782(+) Y 5'UTR//exon       26075521 chr15:59648789-59648790(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111 chr15:59648870-59648871(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr15:59648894-59648895(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr15:59648948-59648949(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr15:59648973-59648974(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr15:59649024-59649025(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111 chr15:59649059-59649060(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111 chr15:59649082-59649083(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111 chr15:59649246-59649247(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr15:59649268-59649269(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr15:59649393-59649394(+) m6A CDS       25412662//24981863//25569111 chr15:59651492-59651493(+) m6A CDS       25683224//25412662//24981863//25569111 chr15:59651503-59651504(+) m6A CDS       25683224//25412662//24981863//25569111 chr15:59651605-59651606(+) m6A CDS       25683224//25412662//24981863//25569111 chr15:59651614-59651615(+) m6A CDS       25683224//25412662//24981863//25569111 chr15:59651731-59651732(+) m6A CDS       25683224//25412662//24981863//25569111 chr15:59651809-59651810(+) m6A 3'UTR//intron       25683224//25412662//24981863//25569111 chr15:59651840-59651841(+) m6A 3'UTR//intron       25683224//25412662//25569111 chr15:59651848-59651849(+) m6A 3'UTR//intron       25683224//25412662//25569111 chr15:59651856-59651857(+) m6A 3'UTR//intron       25683224//25412662//25569111 chr15:59651866-59651867(+) m6A 3'UTR//intron       25683224//25412662//25569111 chr15:59651871-59651872(+) m6A 3'UTR//intron       25683224//25412662//25569111 chr15:59652217-59652218(+) m6A 3'UTR//intron       25412662 chr15:59652278-59652279(+) m6A 3'UTR//intron       25412662 chr15:59653190-59653191(+) m6A 3'UTR//intron       25683224 chr15:59653198-59653199(+) m6A 3'UTR//intron       25683224 chr15:59653502-59653503(+) m6A 3'UTR//intron       25569111 chr15:59653508-59653509(+) m6A 3'UTR//intron       25569111 chr15:59653531-59653532(+) m6A 3'UTR//intron       25569111 chr15:59653636-59653637(+) m6A 3'UTR//intron       24981863 chr15:59653658-59653659(+) m6A 3'UTR//intron       24981863 chr15:59654247-59654248(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr15:59654307-59654308(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59654356-59654357(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59654478-59654479(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59654547-59654548(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59654559-59654560(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59654610-59654611(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59654638-59654639(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59654645-59654646(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59654672-59654673(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59654714-59654715(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59654723-59654724(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59654915-59654916(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59655002-59655003(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59655008-59655009(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59655050-59655051(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59655078-59655079(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59655152-59655153(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr15:59655179-59655180(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr15:59655195-59655196(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr15:59655213-59655214(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22575960 chr15:59655219-59655220(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22575960 chr15:59655238-59655239(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22575960 chr15:59655288-59655289(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:59655370-59655371(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22575960 chr15:59655498-59655499(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22575960 chr15:59655514-59655515(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22575960 chr15:59655531-59655532(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr15:59655545-59655546(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr15:59655579-59655580(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr15:59655634-59655635(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr15:59655652-59655653(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr15:59655791-59655792(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr15:59655815-59655816(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr15:59655823-59655824(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr15:59655895-59655896(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr15:59655930-59655931(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr15:59655966-59655967(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr15:59656028-59656029(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr15:59656131-59656132(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr15:59656273-59656274(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22575960 chr15:59656341-59656342(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr15:59656360-59656361(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr15:59656418-59656419(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr15:59656447-59656448(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr15:59656457-59656458(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr15:59656517-59656518(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-124-3p	Axon Motor neurons     30233312 Cell body Motor neurons     30233312 Cell body Neuron ball cultures     23897634 Dendrite Hippocampal neurons     24784359 Exosome Serum     28160157 Exosome BV2 microglial cells     31190315 Exosome Mouse hypothalamic neuronal cell line (GT1-7)     22965126 Exosome Spinal motor neuron     32712030 Postsynaptic density ForeBrain     18410515 Synaptoneurosome ForeBrain     18410515

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-124-3p
Interactor2: Trib1

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).