Basic Information:

  VIRBase ID:  

HHID00019650

  Virus:  

Japanese encephalitis virus

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-124-3p:  MIMAT0000422          FGFR1:  NM_001174066     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-124-3p	FGFR1
miRBase Accession/Entrez ID	MIMAT0000422	2260
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	bFGF-R-1//BFGFR//CD331//CEK//ECCL//FGFBR//FGFR-1//FLG//FLT-2//FLT2//HBGFR//HH2//HRTFDS//KAL2//N-SAM//OGD

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-124-3p	rs1256263272 chr8:9903400    T/C rs1482188536 chr8:9903410    C/A rs753437646 chr8:9903401    G/T rs759045572 chr8:9903402    G/T rs764861083 chr8:9903408    A/G rs759034202 chr8:64379220    G/A rs1364752547 chr20:63178563    G/A rs749909250 chr20:63178569    G/A rs1287398108 chr20:63178559    C/G rs34059726 chr20:63178555    G/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FGFR1	chr8:38290143(-) A-I      intronic chr8:38290163(-) A-I      intronic chr8:38294577(-) A-I      intronic chr8:38294586(-) A-I      intronic chr8:38301179(-) A-I      intronic chr8:38295985(-) A-I      intronic chr8:38295979(-) A-I      intronic chr8:38295974(-) A-I      intronic chr8:38301431(-) A-I      intronic chr8:38310395(-) A-I      intronic chr8:38305232(-) A-I      intronic chr8:38295834(-) A-I      intronic chr8:38294630(-) A-I      intronic chr8:38294617(-) A-I      intronic chr8:38294616(-) A-I      intronic chr8:38294602(-) A-I      intronic chr8:38294599(-) A-I      intronic chr8:38294594(-) A-I      intronic chr8:38293883(-) A-I      intronic chr8:38293663(-) A-I      intronic chr8:38291801(-) A-I      intronic chr8:38291010(-) A-I      intronic chr8:38291006(-) A-I      intronic chr8:38290944(-) A-I      intronic chr8:38290897(-) A-I      intronic chr8:38290804(-) A-I      intronic chr8:38290785(-) A-I      intronic chr8:38290701(-) A-I      intronic chr8:38290593(-) A-I      intronic chr8:38290169(-) A-I      intronic chr8:38290068(-) A-I      intronic chr8:38290055(-) A-I      intronic chr8:38290028(-) A-I      intronic chr8:38290027(-) A-I      intronic chr8:38284961(-) A-I      intronic chr8:38284911(-) A-I      intronic chr8:38310433(-) A-I      intronic chr8:38290100(-) A-I      intronic chr8:38290098(-) A-I      intronic chr8:38290087(-) A-I      intronic chr8:38303814(-) A-I      intronic chr8:38303822(-) A-I      intronic chr8:38305912(-) A-I      intronic chr8:38311177(-) A-I      intronic chr8:38311328(-) A-I      intronic chr8:38312977(-) A-I      intronic chr8:38304098(-) A-I      intronic chr8:38304222(-) A-I      intronic chr8:38312999(-) A-I      intronic chr8:38313038(-) A-I      intronic chr8:38317535(-) A-I      intronic chr8:38306301(-) A-I      intronic chr8:38306351(-) A-I      intronic chr8:38302128(-) A-I      intronic chr8:38305103(-) A-I      intronic chr8:38317618(-) A-I      intronic chr8:38320587(-) A-I      intronic chr8:38320394(-) A-I      intronic chr8:38320389(-) A-I      intronic chr8:38320373(-) A-I      intronic chr8:38318905(-) A-I      intronic chr8:38320372(-) A-I      intronic chr8:38320368(-) A-I      intronic chr8:38319789(-) A-I      intronic chr8:38305111(-) A-I      intronic chr8:38305179(-) A-I      intronic chr8:38310480(-) A-I      intronic chr8:38309969(-) A-I      intronic chr8:38306364(-) A-I      intronic chr8:38306373(-) A-I      intronic chr8:38306410(-) A-I      intronic chr8:38306520(-) A-I      intronic chr8:38306538(-) A-I      intronic chr8:38306558(-) A-I      intronic chr8:38293675(-) A-I      intronic chr8:38293676(-) A-I      intronic chr8:38293710(-) A-I      intronic chr8:38293713(-) A-I      intronic chr8:38293765(-) A-I      intronic chr8:38301106(-) A-I      intronic chr8:38301108(-) A-I      intronic chr8:38301109(-) A-I      intronic chr8:38301185(-) A-I      intronic chr8:38301449(-) A-I      intronic chr8:38306238(-) A-I      intronic chr8:38306589(-) A-I      intronic chr8:38294591(-) A-I      intronic chr8:38294622(-) A-I      intronic chr8:38294635(-) A-I      intronic chr8:38311176(-) A-I      intronic chr8:38310021(-) A-I      intronic chr8:38290113(-) A-I      intronic chr8:38290110(-) A-I      intronic chr8:38290109(-) A-I      intronic chr8:38320310(-) A-I      intronic chr8:38320289(-) A-I      intronic chr8:38320254(-) A-I      intronic chr8:38318940(-) A-I      intronic chr8:38318929(-) A-I      intronic chr8:38318918(-) A-I      intronic chr8:38318910(-) A-I      intronic chr8:38302182(-) A-I      intronic chr8:38302129(-) A-I      intronic chr8:38290108(-) A-I      intronic chr8:38290107(-) A-I      intronic chr8:38290106(-) A-I      intronic chr8:38290104(-) A-I      intronic chr8:38303724(-) A-I      intronic chr8:38301972(-) A-I      intronic chr8:38310027(-) A-I      intronic chr8:38310076(-) A-I      intronic chr8:38310251(-) A-I      intronic chr8:38310276(-) A-I      intronic chr8:38310330(-) A-I      intronic chr8:38310386(-) A-I      intronic chr8:38302000(-) A-I      intronic chr8:38302039(-) A-I      intronic chr8:38302106(-) A-I      intronic chr8:38269756(-) A-I      3'UTR chr8:38306504(-) A-I      intronic chr8:38310222(-) A-I      intronic chr8:38291800(-) A-I      intronic chr8:38290165(-) A-I      intronic chr8:38293648(-) A-I      intronic chr8:38320286(-) A-I      intronic chr8:38310031(-) A-I      intronic chr8:38312910(-) A-I      intronic chr8:38306316(-) A-I      intronic chr8:38310029(-) A-I      intronic chr8:38320298(-) A-I      intronic chr8:38310313(-) A-I      intronic chr8:38303980(-) A-I      intronic chr8:38306397(-) A-I      intronic chr8:38291120(-) A-I      intronic chr8:38291022(-) A-I      intronic chr8:38294537(-) A-I      intronic chr8:38320236(-) A-I      intronic chr8:38311404(-) A-I      intronic chr8:38304046(-) A-I      intronic chr8:38293771(-) A-I      intronic chr8:38311190(-) A-I      intronic chr8:38300959(-) A-I      intronic chr8:38317538(-) A-I      intronic chr8:38305938(-) A-I      intronic chr8:38318883(-) A-I      intronic chr8:38320260(-) A-I      intronic chr8:38285030(-) A-I      intronic chr8:38311255(-) A-I      intronic chr8:38320301(-) A-I      intronic chr8:38310077(-) A-I      intronic chr8:38303826(-) A-I      intronic chr8:38312740(-) A-I      intronic chr8:38310113(-) A-I      intronic chr8:38320167(-) A-I      intronic chr8:38314378(-) A-I      intronic chr8:38293769(-) A-I      intronic chr8:38290967(-) A-I      intronic chr8:38311334(-) A-I      intronic chr8:38305926(-) A-I      intronic chr8:38290099(-) A-I      intronic chr8:38290683(-) A-I      intronic chr8:38290157(-) A-I      intronic chr8:38320697(-) A-I      intronic chr8:38293727(-) A-I      intronic chr8:38319028(-) A-I      intronic chr8:38319859(-) A-I      intronic chr8:38269767(-) A-I      3'UTR chr8:38269706(-) A-I      3'UTR chr8:38269763(-) A-I      3'UTR chr8:38269667(-) A-I      3'UTR chr8:38318888(-) A-I      intronic chr8:38317615(-) A-I      intronic chr8:38318925(-) A-I      intronic chr8:38293745(-) A-I      intronic chr8:38321587(-) A-I      intronic chr8:38293761(-) A-I      intronic chr8:38306533(-) A-I      intronic chr8:38311262(-) A-I      intronic chr8:38294580(-) A-I      intronic chr8:38319099(-) A-I      intronic chr8:38306498(-) A-I      intronic chr8:38320162(-) A-I      intronic chr8:38317695(-) A-I      intronic chr8:38310373(-) A-I      intronic chr8:38312596(-) A-I      intronic chr8:38304136(-) A-I      intronic chr8:38304047(-) A-I      intronic chr8:38302156(-) A-I      intronic chr8:38304120(-) A-I      intronic chr8:38310310(-) A-I      intronic chr8:38295809(-) A-I      intronic chr8:38309951(-) A-I      intronic chr8:38294483(-) A-I      intronic chr8:38306537(-) A-I      intronic chr8:38301069(-) A-I      intronic chr8:38301067(-) A-I      intronic chr8:38318961(-) A-I      intronic chr8:38293812(-) A-I      intronic chr8:38305900(-) A-I      intronic chr8:38320239(-) A-I      intronic chr8:38300943(-) A-I      intronic chr8:38290902(-) A-I      intronic chr8:38304216(-) A-I      intronic chr8:38319856(-) A-I      intronic chr8:38320696(-) A-I      intronic chr8:38300986(-) A-I      intronic chr8:38305922(-) A-I      intronic chr8:38291016(-) A-I      intronic chr8:38319910(-) A-I      intronic chr8:38320291(-) A-I      intronic chr8:38290896(-) A-I      intronic chr8:38305880(-) A-I      intronic chr8:38317624(-) A-I      intronic chr8:38304199(-) A-I      intronic chr8:38317687(-) A-I      intronic chr8:38304206(-) A-I      intronic chr8:38306256(-) A-I      intronic chr8:38303301(-) A-I      intronic chr8:38293811(-) A-I      intronic chr8:38311506(-) A-I      intronic chr8:38293786(-) A-I      intronic chr8:38290590(-) A-I      intronic chr8:38319767(-) A-I      intronic chr8:38291046(-) A-I      intronic chr8:38310153(-) A-I      intronic chr8:38320688(-) A-I      intronic chr8:38312669(-) A-I      intronic chr8:38314297(-) A-I      intronic chr8:38310140(-) A-I      intronic chr8:38301139(-) A-I      intronic chr8:38306426(-) A-I      intronic chr8:38311175(-) A-I      intronic chr8:38311508(-) A-I      intronic chr8:38311202(-) A-I      intronic chr8:38317458(-) A-I      intronic chr8:38302047(-) A-I      intronic chr8:38311278(-) A-I      intronic chr8:38290095(-) A-I      intronic chr8:38312973(-) A-I      intronic chr8:38309988(-) A-I      intronic chr8:38312667(-) A-I      intronic chr8:38301519(-) A-I      intronic chr8:38290152(-) A-I      intronic chr8:38305858(-) A-I      intronic chr8:38305057(-) A-I      intronic chr8:38310229(-) A-I      intronic chr8:38300930(-) A-I      intronic chr8:38302004(-) A-I      intronic chr8:38293721(-) A-I      intronic chr8:38291031(-) A-I      intronic chr8:38284890(-) A-I      intronic chr8:38306390(-) A-I      intronic chr8:38295978(-) A-I      intronic chr8:38318950(-) A-I      intronic chr8:38309905(-) A-I      intronic chr8:38303804(-) A-I      intronic chr8:38290757(-) A-I      intronic chr8:38311288(-) A-I      intronic chr8:38294631(-) A-I      intronic chr8:38310486(-) A-I      intronic chr8:38306307(-) A-I      intronic chr8:38320675(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FGFR1	chr8:38303278(-) A-I intron -    15342557 chr8:38303290(-) A-I intron -    15342557 chr8:38303291(-) A-I intron -    15342557 chr8:38303301(-) A-I intron -    15342557 chr8:38303826(-) A-I intron -    15342557 chr8:38303980(-) A-I intron -    15342557 chr8:38304046(-) A-I intron -    15342557 chr8:38304047(-) A-I intron -    15342557 chr8:38304068(-) A-I intron -    15342557 chr8:38304120(-) A-I intron -    15342557 chr8:38304169(-) A-I intron -    15342557 chr8:38304199(-) A-I intron -    15342557 chr8:38304200(-) A-I intron -    15342557 chr8:38304206(-) A-I intron -    15342557 chr8:38304216(-) A-I intron -    15342557 chr8:38269706(-) A-G exon 3'UTR    22484847 chr8:38290095(-) A-G intron -    22484847 chr8:38290152(-) A-G intron -    22484847 chr8:38290157(-) A-G intron -    22484847 chr8:38290165(-) A-G intron -    22484847 chr8:38291061(-) A-G intron -    22484847 chr8:38292660(-) A-G intron -    22484847 chr8:38292661(-) A-G intron -    22484847 chr8:38300998(-) A-G intron -    22484847 chr8:38301067(-) A-G intron -    22484847 chr8:38301069(-) A-G intron -    22484847 chr8:38305922(-) A-G intron -    22484847 chr8:38306307(-) A-G intron -    22484847 chr8:38306397(-) A-G intron -    22484847 chr8:38309938(-) A-G intron -    22484847 chr8:38309951(-) A-G intron -    22484847 chr8:38310007(-) A-G intron -    22484847 chr8:38310029(-) A-G intron -    22484847 chr8:38310031(-) A-G intron -    22484847 chr8:38310080(-) A-G intron -    22484847 chr8:38310140(-) A-G intron -    22484847 chr8:38310373(-) A-G intron -    22484847 chr8:38310387(-) A-G intron -    22484847 chr8:38311255(-) A-G intron -    22484847 chr8:38311327(-) A-G intron -    22484847 chr8:38311334(-) A-G intron -    22484847 chr8:38317538(-) A-G intron -    22484847 chr8:38317615(-) A-G intron -    22484847 chr8:38317638(-) A-G intron -    22484847 chr8:38318888(-) A-G intron -    22484847 chr8:38319856(-) A-G intron -    22484847 chr8:38320688(-) A-G intron -    22484847 chr8:38320696(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FGFR1	chr8:38269197-38269198(-) m6A 3'UTR       - chr8:38269340-38269341(-) m6A 3'UTR       26404942 chr8:38269381-38269382(-) m6A 3'UTR       24981863//26404942 chr8:38269396-38269397(-) m6A 3'UTR       24981863//26404942 chr8:38269492-38269493(-) m6A 3'UTR       24981863//26404942 chr8:38269551-38269552(-) m6A 3'UTR       24981863//26404942 chr8:38269557-38269558(-) m6A 3'UTR       24981863//26404942//22608085 chr8:38269563-38269564(-) m6A 3'UTR       24981863//26404942//22608085 chr8:38269586-38269587(-) m6A 3'UTR       24981863//22608085 chr8:38269598-38269599(-) m6A 3'UTR       24981863//22608085 chr8:38269823-38269824(-) m6A 3'UTR//exon       24209618 chr8:38270829-38270830(-) m6A 3'UTR//exon//intron       24981863 chr8:38270888-38270889(-) m6A 3'UTR//exon//intron       24981863 chr8:38271120-38271121(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//22608085 chr8:38271160-38271161(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//22608085 chr8:38271293-38271294(-) m6A 3'UTR//CDS//exon//intron       27773535 chr8:38271311-38271312(-) m6A 3'UTR//CDS//exon//intron       27773535 chr8:38272304-38272305(-) m6A 3'UTR//CDS//exon       24981863 chr8:38272333-38272334(-) m6A 3'UTR//CDS//exon       24981863 chr8:38272351-38272352(-) m6A 3'UTR//CDS//exon       24981863 chr8:38272372-38272373(-) m6A 3'UTR//CDS//exon       24981863 chr8:38272405-38272406(-) m6A 3'UTR//CDS//exon       24981863 chr8:38275431-38275432(-) m6A 3'UTR//CDS//exon       26404942 chr8:38275437-38275438(-) m6A 3'UTR//CDS//exon       26404942 chr8:38281822-38281823(-) m6A exon//intron       - chr8:38281860-38281861(-) m6A exon//intron       - chr8:38282054-38282055(-) m6A 3'UTR//CDS//exon//intron       26404942 chr8:38282166-38282167(-) m6A 3'UTR//CDS//exon//intron       26404942//27371828//27773536 chr8:38283731-38283732(-) m6A 3'UTR//CDS//exon//intron       27371828 chr8:38285980-38285981(-) m6A exon//intron       27773535 chr8:38287288-38287289(-) m6A CDS//exon//intron       24284625 chr8:38292035-38292036(-) m6A intron       25456834 chr8:38292083-38292084(-) m6A intron       25456834//24981863 chr8:38292105-38292106(-) m6A intron       25456834//24981863 chr8:38292705-38292706(-) m6A intron       24981863 chr8:38292714-38292715(-) m6A intron       24981863 chr8:38292720-38292721(-) m6A intron       24981863 chr8:38325515-38325516(-) m6A 5'UTR//exon       27371828//27773536 chr8:38325531-38325532(-) m6A 5'UTR//exon       27371828//27773536 chr8:38325600-38325601(-) m6A 5'UTR//exon       24209618//27371828//27773536 chr8:38325606-38325607(-) m6A 5'UTR//exon       24209618//27371828//27773536 chr8:38325755-38325756(-) m6A 5'UTR//exon       25456834//27371828//27773536 chr8:38325921-38325922(-) m6A 5'UTR//exon       24209618//25456834//24981863//26404942//27371828//27773536 chr8:38325929-38325930(-) m6A 5'UTR//exon       24209618//25456834//24981863//26404942//27371828//27773536 chr8:38326001-38326002(-) m6A 5'UTR//exon       24209618//25456834//24981863//27371828//27773536 chr8:38326007-38326008(-) m6A 5'UTR//exon       24209618//25456834//24981863//27371828//27773536 chr8:38326048-38326049(-) m6A 5'UTR//exon       24209618//25456834//24981863//27371828//27773536 chr8:38326199-38326200(-) m6A 5'UTR       25456834//24981863//27371828 chr8:38326246-38326247(-) m6A 5'UTR       25456834//27371828 chr8:38326289-38326290(-) m6A 5'UTR       25456834//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-124-3p	Exosome Plasma     23663360 Exosome Blood     - Microvesicle Cerebrospinal fluid     24797360 Microvesicle Blood|Fibroblasts|Urine     - Mitochondrion Cell line (HEK-293)     22984580
	FGFR1	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HeLa-S3 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID	Function	Link
RNAInter	hsa-miR-124-3p	N,N-Dimethyltryptamine 6089 Drug interaction    RC00002595 Estradiol 5757 Drug interaction    RC00002594 Vorinostat 5311 Drug interaction    RC00002593 Cocaine 446220 Drug interaction    RC00002602 Paroxetine 43815 Drug interaction    RC00002601 Methylphenidate 4158 Drug interaction    RC00002592 Methadone 4095 Drug interaction    RC00002591 Etoposide 36462 Drug interaction    RC00002600 Harmaline 3564 Drug interaction    RC00002603 Fluoxetine 3386 Drug interaction    RC00002590 Enoxacin 3229 Drug interaction    RC00002589 Doxorubicin 31703 Drug interaction    RC00002599 Desipramine 2995 Drug interaction    RC00002588 Camptothecin 24360 Drug interaction    RC00002598 Cobalt chloride (CoCl2) 24288 Drug interaction    RC00002597 N,N-Dimethyl-5-methoxytryptamine 1832 Drug interaction    RC00002587 Arsenic trioxide 14888 Drug interaction    RC00002596 IR - Drug interaction    RC00002604

Resource	Symbol	Drug Name	PubChem ID	PMID
NoncoRNA	hsa-miR-124-3p	Doxorubicin 31703       30807260

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-124-3p
Interactor2: FGFR1

Evidence Support:

Weak-Evidence	miRNA array
Prediction-Evidence	Targetscan
Support Database	ViRBase

References:

PMID	31578247	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	hNPC cells//hNS1 cells	Interactor2 expression	None
Description	TABLE S4.miRNA target genes and their repetition frequency in biological pathways.