Detail Information

Basic Information:


  VIRBase ID:  

HHID00018144

  Virus:  

Zaire ebolavirus (ZEBOV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-190a-3p:           RAB11FIP2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-190a-3p RAB11FIP2
miRBase
Accession/Entrez ID		 MIMAT0026482 22841
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - nRip11//Rab11-FIP2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-190a-3p
rs1367478528 chr15:62824008    C/T
rs146591219 chr15:62824027    C/T
rs1311298147 chr15:62824010    A/G
rs771043955 chr15:62824015    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RAB11FIP2
chr10:119776622(-) A-I      intronic
chr10:119776638(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RAB11FIP2
chr10:119765259-119765260(-) m6A 3'UTR       24981863
chr10:119765266-119765267(-) m6A 3'UTR//exon       24981863
chr10:119765376-119765377(-) m6A 3'UTR//intron       24981863//27773535
chr10:119765396-119765397(-) m6A 3'UTR//intron       27773535
chr10:119765407-119765408(-) m6A 3'UTR//intron       27773535
chr10:119767400-119767401(-) m6A 3'UTR//intron       24981863
chr10:119767411-119767412(-) m6A 3'UTR//intron       24981863
chr10:119768259-119768260(-) m6A 3'UTR//intron       27773535
chr10:119768351-119768352(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr10:119768424-119768425(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr10:119768441-119768442(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr10:119768477-119768478(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr10:119768544-119768545(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr10:119768611-119768612(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr10:119768619-119768620(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr10:119768635-119768636(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr10:119768652-119768653(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr10:119768661-119768662(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr10:119774591-119774592(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr10:119798554-119798555(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr10:119798625-119798626(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr10:119798724-119798725(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr10:119798749-119798750(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr10:119798756-119798757(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr10:119798850-119798851(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr10:119798896-119798897(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr10:119798924-119798925(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr10:119799648-119799649(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr10:119799670-119799671(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr10:119799684-119799685(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr10:119799709-119799710(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr10:119799799-119799800(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr10:119799894-119799895(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr10:119799951-119799952(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr10:119799956-119799957(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr10:119799995-119799996(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr10:119800034-119800035(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr10:119800054-119800055(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr10:119805325-119805326(-) m6A CDS       24284625//24981863//27773535//22608085
chr10:119805342-119805343(-) m6A CDS       24981863//27773535//22608085
chr10:119805866-119805867(-) m6A 5'UTR       24284625
chr10:119805947-119805948(-) m6A 5'UTR       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-190a-3p
Exosome Plasma     23663360
Exosome Plasma     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
RAB11FIP2
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-190a-3p
Interactor2: RAB11FIP2

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence Targetscan
Support Database ViRBase

References:


PMID 31570108 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line ARPE-19 human RPE cells Interactor2 expression None
Description Table 1 List of miRNAs that were differentially expressed between EBOV- and mock-infected human RPE cells at 24 h post-infection.Putative target genes in EBOV-infected human RPE cells were predicted from the 15 highly differentially expressed miRNAs using algorithms: 2629 targets by Diana microT; 1799 targets by miRDB; and 14315 targets by TargetScan (Additional file 5).

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