Basic Information:

  VIRBase ID:  

HHID00017642

  Virus:  

Zaire ebolavirus (ZEBOV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5908

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-190a-3p:  MIMAT0026482          ID2:  NM_002166     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-190a-3p	ID2
miRBase Accession/Entrez ID	MIMAT0026482	3398
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	bHLHb26//GIG8//ID2A//ID2H

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-190a-3p	rs1367478528 chr15:62824008    C/T rs146591219 chr15:62824027    C/T rs1311298147 chr15:62824010    A/G rs771043955 chr15:62824015    T/C

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ID2	chr2:8823570(+) A-I      intronic chr2:8823643(+) A-I      intronic chr2:8823637(+) A-I      intronic chr2:8823631(+) A-I      intronic chr2:8823591(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ID2	chr2:8822332-8822333(+) m6A CDS       24981863 chr2:8822344-8822345(+) m6A CDS       24981863 chr2:8822373-8822374(+) m6A CDS       - chr2:8822461-8822462(+) m6A CDS       - chr2:8823067-8823068(+) m6A 3'UTR//intron       27773535//22608085 chr2:8823885-8823886(+) m6A 3'UTR//exon       24981863//27773535//22608085 chr2:8823914-8823915(+) m6A 3'UTR//exon       24981863//27773535//22608085 chr2:8823927-8823928(+) m6A 3'UTR//exon       24981863//27773535//22608085 chr2:8823961-8823962(+) m6A 3'UTR//exon       24981863//27773535//22608085 chr2:8824001-8824002(+) m6A 3'UTR//exon       24981863//27773535//22608085 chr2:8824029-8824030(+) m6A 3'UTR//exon       24981863//27773535//22608085 chr2:8824133-8824134(+) m6A 3'UTR//exon       24981863//27773535//22608085 chr2:8824286-8824287(+) m6A 3'UTR       27773535 chr2:8824295-8824296(+) m6A 3'UTR       27773535 chr2:8824380-8824381(+) m6A 3'UTR       27773535 chr2:8824405-8824406(+) m6A 3'UTR       27773535 chr2:8824475-8824476(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-190a-3p	Exosome Plasma     23663360 Exosome Plasma     24683445 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
	ID2	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleus HeLa-S3 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-190a-3p
Interactor2: ID2

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRDB//Targetscan
Support Database	ViRBase

References:

PMID	31570108	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	ARPE-19 human RPE cells	Interactor2 expression	None
Description	Table 1 List of miRNAs that were differentially expressed between EBOV- and mock-infected human RPE cells at 24 h post-infection.Putative target genes in EBOV-infected human RPE cells were predicted from the 15 highly differentially expressed miRNAs using algorithms: 2629 targets by Diana microT; 1799 targets by miRDB; and 14315 targets by TargetScan (Additional file 5).