Basic Information:

  VIRBase ID:  

HHID00017508

  Virus:  

Zaire ebolavirus (ZEBOV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5908

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-190a-3p:  MIMAT0026482          MS4A1:  NM_152867     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-190a-3p	MS4A1
miRBase Accession/Entrez ID	MIMAT0026482	931
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	B1//Bp35//CD20//CVID5//FMC7//LEU-16//MS4A2//S7

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-190a-3p	rs1367478528 chr15:62824008    C/T rs146591219 chr15:62824027    C/T rs1311298147 chr15:62824010    A/G rs771043955 chr15:62824015    T/C

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MS4A1	chr11:60229198(+) A-I      intronic chr11:60227509(+) A-I      intronic chr11:60229134(+) A-I      intronic chr11:60227518(+) A-I      intronic chr11:60229254(+) A-I      intronic chr11:60229092(+) A-I      intronic chr11:60227517(+) A-I      intronic chr11:60229093(+) A-I      intronic chr11:60229024(+) A-I      intronic chr11:60227523(+) A-I      intronic chr11:60224347(+) A-I      intronic chr11:60229202(+) A-I      intronic chr11:60229213(+) A-I      intronic chr11:60229073(+) A-I      intronic chr11:60229012(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	MS4A1	chr11:60224347(+) A-G intron -    22484847 chr11:60227509(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MS4A1	chr11:60235757-60235758(+) m6A CDS//exon       - chr11:60235800-60235801(+) m6A CDS//exon       - chr11:60235828-60235829(+) m6A CDS       - chr11:60235869-60235870(+) m6A CDS       - chr11:60235879-60235880(+) m6A CDS       - chr11:60235889-60235890(+) m6A CDS       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-190a-3p	Exosome Plasma     23663360 Exosome Plasma     24683445 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
	MS4A1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-190a-3p
Interactor2: MS4A1

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRDB//Targetscan
Support Database	ViRBase

References:

PMID	31570108	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	ARPE-19 human RPE cells	Interactor2 expression	None
Description	Table 1 List of miRNAs that were differentially expressed between EBOV- and mock-infected human RPE cells at 24 h post-infection.Putative target genes in EBOV-infected human RPE cells were predicted from the 15 highly differentially expressed miRNAs using algorithms: 2629 targets by Diana microT; 1799 targets by miRDB; and 14315 targets by TargetScan (Additional file 5).