Detail Information

Basic Information:


  VIRBase ID:  

HHID00017061

  Virus:  

Zaire ebolavirus (ZEBOV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1307-5p:           SPATA33:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1307-5p SPATA33
miRBase
Accession/Entrez ID		 MIMAT0022727 124045
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C16orf55

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1307-5p
rs1309634229 chr10:103394348    C/CCGGTCGAGATTGGTACA
rs1361155526 chr10:103394342    G/T
rs1368355489 chr10:103394339    CGAGCCGGTCGA/C
rs752308702 chr10:103394349    G/A
rs753442502 chr10:103394342    GCCGGTCGAGGT/GCCGGTCGAGGTCCGGTCGAGGT
rs753442502 chr10:103394342    GCCGGTCGAGGT/G
rs758906629 chr10:103394350    A/AGGTCC
rs762691771 chr10:103394351    G/A
rs766738312 chr10:103394345    G/A
rs766738312 chr10:103394345    G/C
rs909057468 chr10:103394348    C/T
rs1485833698 chr10:103394358    T/C
rs745681690 chr10:103394354    C/T
rs750389441 chr10:103394360    G/A
rs750389441 chr10:103394360    G/C
rs751122680 chr10:103394356    G/A
rs757138030 chr10:103394359    C/G
rs757138030 chr10:103394359    C/T
rs763490878 chr10:103394355    C/G
rs763490878 chr10:103394355    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SPATA33
chr16:89732345(+) A-I      intronic
chr16:89732211(+) A-I      intronic
chr16:89732212(+) A-I      intronic
chr16:89732323(+) A-I      intronic
chr16:89730317(+) A-I      intronic
chr16:89732328(+) A-I      intronic
chr16:89732337(+) A-I      intronic
chr16:89728605(+) A-I      intronic
chr16:89728925(+) A-I      intronic
chr16:89728949(+) A-I      intronic
chr16:89729015(+) A-I      intronic
chr16:89729069(+) A-I      intronic
chr16:89729331(+) A-I      intronic
chr16:89729666(+) A-I      intronic
chr16:89730326(+) A-I      intronic
chr16:89730420(+) A-I      intronic
chr16:89730452(+) A-I      intronic
chr16:89731516(+) A-I      intronic
chr16:89730366(+) A-I      intronic
chr16:89731944(+) A-I      intronic
chr16:89732367(+) A-I      intronic
chr16:89731603(+) A-I      intronic
chr16:89732332(+) A-I      intronic
chr16:89732327(+) A-I      intronic
chr16:89728423(+) A-I      intronic
chr16:89734640(+) A-I      intronic
chr16:89730325(+) A-I      intronic
chr16:89732492(+) A-I      intronic
chr16:89729916(+) A-I      intronic
chr16:89731543(+) A-I      intronic
chr16:89730390(+) A-I      intronic
chr16:89729704(+) A-I      intronic
chr16:89734710(+) A-I      intronic
chr16:89730406(+) A-I      intronic
chr16:89730433(+) A-I      intronic
chr16:89732439(+) A-I      intronic
chr16:89731521(+) A-I      intronic
chr16:89732395(+) A-I      intronic
chr16:89732440(+) A-I      intronic
chr16:89732373(+) A-I      intronic
chr16:89734599(+) A-I      intronic
chr16:89731586(+) A-I      intronic
chr16:89730351(+) A-I      intronic
chr16:89729055(+) A-I      intronic
chr16:89728450(+) A-I      intronic
chr16:89729766(+) A-I      intronic
chr16:89729760(+) A-I      intronic
chr16:89729921(+) A-I      intronic
chr16:89732480(+) A-I      intronic
chr16:89730380(+) A-I      intronic
chr16:89728932(+) A-I      intronic
chr16:89732302(+) A-I      intronic
chr16:89729733(+) A-I      intronic
chr16:89732410(+) A-I      intronic
chr16:89730289(+) A-I      intronic
chr16:89732911(+) A-I      intronic
chr16:89730865(+) A-I      intronic
chr16:89736797(+) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SPATA33
chr16:89724345-89724346(+) m6A CDS//intron       24209618
chr16:89724769-89724770(+) m6A 3'UTR//CDS//intron       24284625
chr16:89724792-89724793(+) m6A 3'UTR//CDS//intron       24284625
chr16:89724907-89724908(+) m6A 3'UTR//intron       24284625
chr16:89724921-89724922(+) m6A 3'UTR//intron       24284625
chr16:89726121-89726122(+) m6A 3'UTR//intron       25456834//22608085
chr16:89726135-89726136(+) m6A 3'UTR//intron       25456834//24981863//22608085
chr16:89726191-89726192(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085
chr16:89726253-89726254(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085
chr16:89726266-89726267(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085
chr16:89726293-89726294(+) m6A 3'UTR//intron       24284625//25456834//22608085
chr16:89726313-89726314(+) m6A 3'UTR//intron       24284625//25456834
chr16:89726353-89726354(+) m6A 3'UTR//intron       24284625
chr16:89726544-89726545(+) m6A 3'UTR//intron       24284625//25456834
chr16:89726621-89726622(+) m6A 3'UTR//intron       24284625//25456834
chr16:89726670-89726671(+) m6A 3'UTR//intron       24284625//25456834//22608085
chr16:89726710-89726711(+) m6A 3'UTR//intron       24284625//25456834//22608085
chr16:89726774-89726775(+) m6A 3'UTR//intron       24284625//25456834//22608085
chr16:89726807-89726808(+) m6A 3'UTR//intron       24284625//25456834//22608085
chr16:89726868-89726869(+) m6A 3'UTR//intron       24284625//25456834
chr16:89726881-89726882(+) m6A 3'UTR//intron       24284625
chr16:89726901-89726902(+) m6A 3'UTR//intron       -
chr16:89727020-89727021(+) m6A 3'UTR//intron       22608085
chr16:89727032-89727033(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085
chr16:89727048-89727049(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085
chr16:89727166-89727167(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085
chr16:89727207-89727208(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085
chr16:89727268-89727269(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22608085
chr16:89727280-89727281(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22608085
chr16:89727313-89727314(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//22608085
chr16:89727428-89727429(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085
chr16:89727468-89727469(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085
chr16:89727503-89727504(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085
chr16:89727549-89727550(+) m6A 3'UTR//intron       24284625//24981863//22608085
chr16:89727675-89727676(+) m6A 3'UTR//intron       24981863//22608085
chr16:89735697-89735698(+) m6A 3'UTR//CDS       24284625
chr16:89735815-89735816(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863
chr16:89735834-89735835(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863
chr16:89735861-89735862(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863
chr16:89735905-89735906(+) m6A 3'UTR       24284625//24209618//25456834//24981863
chr16:89735956-89735957(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr16:89736042-89736043(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr16:89736169-89736170(+) m6A 3'UTR       24284625//24209618//25456834
chr16:89736232-89736233(+) m6A 3'UTR       24284625//24209618
chr16:89736601-89736602(+) m6A 3'UTR       24981863
chr16:89736664-89736665(+) m6A 3'UTR       24284625//22608085
chr16:89736890-89736891(+) m6A 3'UTR       24981863//22608085
chr16:89736935-89736936(+) m6A 3'UTR       24981863//22608085
chr16:89736960-89736961(+) m6A 3'UTR       24981863//22608085
chr16:89737005-89737006(+) m6A 3'UTR       22608085
chr16:89737060-89737061(+) m6A 3'UTR       22608085
chr16:89737176-89737177(+) m6A 3'UTR       24209618//25456834//22608085
chr16:89737193-89737194(+) m6A 3'UTR       24209618//25456834//22608085
chr16:89737276-89737277(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr16:89737282-89737283(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr16:89737297-89737298(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr16:89737349-89737350(+) m6A 3'UTR       24209618//25456834//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1307-5p
Exosome Plasma     23663360
Exosome Colon cancer cell line (LIM1863)     25330373
Exosome Blood|B lymphoblastoid cells|Chronic lymphocytic leukemia cells|Endothelial cells|Kidney tissue|Lymphoma tissue     -
Microvesicle Serum     24797360
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
SPATA33
Exosome Blood     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1307-5p
Interactor2: SPATA33

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence Targetscan
Support Database ViRBase

References:


PMID 31570108 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line ARPE-19 human RPE cells Interactor2 expression None
Description Table 1 List of miRNAs that were differentially expressed between EBOV- and mock-infected human RPE cells at 24 h post-infection.Putative target genes in EBOV-infected human RPE cells were predicted from the 15 highly differentially expressed miRNAs using algorithms: 2629 targets by Diana microT; 1799 targets by miRDB; and 14315 targets by TargetScan (Additional file 5).

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