Detail Information

Basic Information:


  VIRBase ID:  

HHID00015746

  Virus:  

Zaire ebolavirus (ZEBOV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3074-3p:           ADAT2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3074-3p ADAT2
miRBase
Accession/Entrez ID		 MIMAT0015027 134637
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - DEADC1//dJ20N2//dJ20N2.1//TAD2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3074-3p
rs1239868123 chr9:95086025    G/A
rs1359892054 chr9:95086026    G/A
rs527734535 chr9:95086037    G/C
rs778461843 chr9:95086024    C/T
rs1462524363 chr9:95086042    T/TA
rs746151874 chr9:95086044    T/A
rs746151874 chr9:95086044    T/C
rs746151874 chr9:95086044    T/G
rs779347857 chr9:95086041    A/G
rs959770203 chr9:95086039    T/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ADAT2
chr6:143770843(-) A-I      intronic
chr6:143770842(-) A-I      intronic
chr6:143770844(-) A-I      intronic
chr6:143770848(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ADAT2
chr6:143764631(-) T-C intron -    22484847
chr6:143764797(-) T-C intron -    22484847
chr6:143764980(-) T-C intron -    22484847
chr6:143764981(-) C-T intron -    22484847
chr6:143764982(-) A-C intron -    22484847
chr6:143764983(-) A-T intron -    22484847
chr6:143764984(-) T-A intron -    22484847
chr6:143770847(-) A-G intron -    22484847
chr6:143771159(-) A-G intron -    22484847
chr6:143771171(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ADAT2
chr6:143746948-143746949(-) m6A 3'UTR       27773535
chr6:143746967-143746968(-) m6A 3'UTR       27773535
chr6:143747738-143747739(-) m6A 3'UTR       27773535//22608085
chr6:143747757-143747758(-) m6A 3'UTR       27773535//22608085
chr6:143747799-143747800(-) m6A 3'UTR       27773535
chr6:143747846-143747847(-) m6A 3'UTR       27773535
chr6:143747856-143747857(-) m6A 3'UTR       27773535
chr6:143748642-143748643(-) m6A 3'UTR       27773535
chr6:143748705-143748706(-) m6A 3'UTR       27773535//22608085
chr6:143748782-143748783(-) m6A 3'UTR       24981863//27773535//22608085
chr6:143748813-143748814(-) m6A 3'UTR       24981863//27773535//22608085
chr6:143748892-143748893(-) m6A 3'UTR       27773535//22608085
chr6:143748913-143748914(-) m6A 3'UTR       27773535
chr6:143748924-143748925(-) m6A 3'UTR       27773535
chr6:143748971-143748972(-) m6A 3'UTR       27773535
chr6:143749021-143749022(-) m6A 3'UTR       27773535
chr6:143749065-143749066(-) m6A 3'UTR       27773535
chr6:143749092-143749093(-) m6A 3'UTR       27773535//22608085
chr6:143749200-143749201(-) m6A 3'UTR       24981863//27773535//22608085
chr6:143749214-143749215(-) m6A 3'UTR       24981863//27773535//22608085
chr6:143749236-143749237(-) m6A 3'UTR       24981863//27773535//22608085
chr6:143749253-143749254(-) m6A 3'UTR       24981863//27773535//22608085
chr6:143749261-143749262(-) m6A 3'UTR       24981863//27773535//22608085
chr6:143749543-143749544(-) m6A 3'UTR       24981863//22608085
chr6:143749556-143749557(-) m6A 3'UTR       24981863//22608085
chr6:143749580-143749581(-) m6A 3'UTR       24981863//22608085
chr6:143749598-143749599(-) m6A 3'UTR       24981863//22608085
chr6:143749764-143749765(-) m6A CDS       -
chr6:143749775-143749776(-) m6A CDS       -
chr6:143771731-143771732(-) m6A CDS//exon       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3074-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells     -
ADAT2
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3074-3p
Interactor2: ADAT2

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence Targetscan
Support Database ViRBase

References:


PMID 31570108 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line ARPE-19 human RPE cells Interactor2 expression None
Description Table 1 List of miRNAs that were differentially expressed between EBOV- and mock-infected human RPE cells at 24 h post-infection.Putative target genes in EBOV-infected human RPE cells were predicted from the 15 highly differentially expressed miRNAs using algorithms: 2629 targets by Diana microT; 1799 targets by miRDB; and 14315 targets by TargetScan (Additional file 5).

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