Basic Information:

  VIRBase ID:  

HHID00007760

  Virus:  

Zaire ebolavirus (ZEBOV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-19b-1-5p:  MIMAT0004491          PLCXD3:  NM_001005473     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-19b-1-5p	PLCXD3
miRBase Accession/Entrez ID	MIMAT0004491	345557
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-19b-1-5p	rs1330845252 chr13:91351221    G/A rs771220050 chr13:91351229    C/T rs1259633726 chr13:91351212    T/G rs1279688822 chr13:91351213    G/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PLCXD3	chr5:41421765(-) A-I      intronic chr5:41346156(-) A-I      intronic chr5:41346162(-) A-I      intronic chr5:41372976(-) A-I      intronic chr5:41421740(-) A-I      intronic chr5:41421756(-) A-I      intronic chr5:41421762(-) A-I      intronic chr5:41424640(-) A-I      intronic chr5:41372911(-) A-I      intronic chr5:41346176(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PLCXD3	chr5:41312626-41312627(-) m6A 3'UTR       25456834 chr5:41312738-41312739(-) m6A 3'UTR//intron       25456834 chr5:41312840-41312841(-) m6A 3'UTR       25456834 chr5:41382067-41382068(-) m6A CDS       25456834 chr5:41382077-41382078(-) m6A CDS       25456834 chr5:41382176-41382177(-) m6A CDS       25456834//24981863 chr5:41382248-41382249(-) m6A CDS       24981863 chr5:41382268-41382269(-) m6A CDS       24981863 chr5:41382311-41382312(-) m6A CDS       24981863 chr5:41382412-41382413(-) m6A CDS       25456834//24981863 chr5:41382425-41382426(-) m6A CDS       25456834//24981863 chr5:41382498-41382499(-) m6A CDS       25456834//24981863 chr5:41382540-41382541(-) m6A CDS       24981863 chr5:41382570-41382571(-) m6A CDS       24981863 chr5:41510655-41510656(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-19b-1-5p	Exosome Jurkat-derived T cell line (J77cl20)     21505438 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Mesenchymal stem cells     -
	PLCXD3	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-19b-1-5p
Interactor2: PLCXD3

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	Targetscan
Support Database	ViRBase

References:

PMID	31570108	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	ARPE-19 human RPE cells	Interactor2 expression	None
Description	Table 1 List of miRNAs that were differentially expressed between EBOV- and mock-infected human RPE cells at 24 h post-infection.Putative target genes in EBOV-infected human RPE cells were predicted from the 15 highly differentially expressed miRNAs using algorithms: 2629 targets by Diana microT; 1799 targets by miRDB; and 14315 targets by TargetScan (Additional file 5).