Basic Information:

  VIRBase ID:  

HHID00005331

  Virus:  

Zaire ebolavirus (ZEBOV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-190a-5p:  MIMAT0000458          BMPER:  NM_133468     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-190a-5p	BMPER
miRBase Accession/Entrez ID	MIMAT0000458	168667
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	CRIM3//CV-2//CV2

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-190a-5p	rs1018706777 chr15:62823984    A/G rs1369926402 chr15:62823991    G/A rs1555521311 chr15:62823990    G/C rs755866868 chr15:62823986    A/G rs766742872 chr15:62823990    GGTT/G rs777464613 chr15:62823987    T/G rs1228899174 chr15:62823974    T/A rs1281303771 chr15:62823976    T/C rs1350000299 chr15:62823972    G/A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	BMPER	chr7:34160257(+) A-I      intronic chr7:34063774(+) A-I      intronic chr7:34063794(+) A-I      intronic chr7:34063805(+) A-I      intronic chr7:34063814(+) A-I      intronic chr7:33994553(+) A-I      intronic chr7:33994558(+) A-I      intronic chr7:33994566(+) A-I      intronic chr7:34003346(+) A-I      intronic chr7:34003350(+) A-I      intronic chr7:34151951(+) A-I      intronic chr7:34063768(+) A-I      intronic chr7:34160085(+) A-I      intronic chr7:34063823(+) A-I      intronic chr7:34160091(+) A-I      intronic chr7:34151505(+) A-I      intronic chr7:34063817(+) A-I      intronic chr7:34003349(+) A-I      intronic chr7:34063876(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	BMPER	chr7:34118524-34118525(+) m6A CDS//intron       24981863 chr7:34118567-34118568(+) m6A CDS//intron       24981863 chr7:34118623-34118624(+) m6A CDS//intron       24981863 chr7:34118641-34118642(+) m6A CDS//intron       24981863 chr7:34125391-34125392(+) m6A CDS//exon       24981863 chr7:34125464-34125465(+) m6A CDS//exon       24981863//22608085 chr7:34125499-34125500(+) m6A CDS//exon       24981863//22608085 chr7:34125566-34125567(+) m6A CDS//exon       25456834//24981863 chr7:34125590-34125591(+) m6A CDS//exon       25456834//24981863 chr7:34125603-34125604(+) m6A CDS//exon       25456834//24981863 chr7:34192829-34192830(+) m6A CDS       24981863 chr7:34192905-34192906(+) m6A 3'UTR       24981863 chr7:34192954-34192955(+) m6A 3'UTR       24981863 chr7:34192984-34192985(+) m6A 3'UTR       24981863 chr7:34193035-34193036(+) m6A 3'UTR       24981863 chr7:34193055-34193056(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-190a-5p	Exosome Hepatocellular carcinoma cell line (HepG2)|Lung epithelial carcinoma cell line (A549)     20615901 Exosome Brain tissue     23382797 Exosome Plasma     23663360 Exosome Plasma     24683445 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Hepatocellular carcinoma cell line (HepG2)|Lung epithelial carcinoma cell line (A549)     20615901 Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells|Urine     -
	BMPER	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-190a-5p
Interactor2: BMPER

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	DIANA-microT//miRDB//Targetscan
Support Database	ViRBase

References:

PMID	31570108	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	ARPE-19 human RPE cells	Interactor2 expression	None
Description	Table 1 List of miRNAs that were differentially expressed between EBOV- and mock-infected human RPE cells at 24 h post-infection.Putative target genes in EBOV-infected human RPE cells were predicted from the 15 highly differentially expressed miRNAs using algorithms: 2629 targets by Diana microT; 1799 targets by miRDB; and 14315 targets by TargetScan (Additional file 5).