Detail Information

Basic Information:


  VIRBase ID:  

HHID00005163

  Virus:  

Zaire ebolavirus (ZEBOV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-190a-5p:           STARD13:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-190a-5p STARD13
miRBase
Accession/Entrez ID		 MIMAT0000458 90627
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ARHGAP37//DLC2//GT650//LINC00464

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-190a-5p
rs1018706777 chr15:62823984    A/G
rs1369926402 chr15:62823991    G/A
rs1555521311 chr15:62823990    G/C
rs755866868 chr15:62823986    A/G
rs766742872 chr15:62823990    GGTT/G
rs777464613 chr15:62823987    T/G
rs1228899174 chr15:62823974    T/A
rs1281303771 chr15:62823976    T/C
rs1350000299 chr15:62823972    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR STARD13
chr13:33695642(-) A-I      intronic
chr13:33695648(-) A-I      intronic
chr13:33761948(-) A-I      intronic
chr13:33761998(-) A-I      intronic
chr13:33824135(-) A-I      intronic
chr13:33824141(-) A-I      intronic
chr13:33824146(-) A-I      intronic
chr13:33761999(-) A-I      intronic
chr13:33695597(-) A-I      intronic
chr13:33762000(-) A-I      intronic
chr13:33824131(-) A-I      intronic
chr13:33695071(-) A-I      intronic
chr13:33695060(-) A-I      intronic
chr13:33695041(-) A-I      intronic
chr13:33695045(-) A-I      intronic
chr13:33695157(-) A-I      intronic
chr13:33695643(-) A-I      intronic
chr13:33696075(-) A-I      intronic
chr13:33697070(-) A-I      intronic
chr13:33715115(-) A-I      intronic
chr13:33796346(-) A-I      intronic
chr13:33694939(-) A-I      intronic
chr13:33824096(-) A-I      intronic
chr13:33696165(-) A-I      intronic
chr13:33824059(-) A-I      intronic
chr13:33800844(-) A-I      intronic
chr13:33716319(-) A-I      intronic
chr13:33800839(-) A-I      intronic
chr13:33800674(-) A-I      intronic
chr13:33695928(-) A-I      intronic
chr13:33800643(-) A-I      intronic
chr13:33797750(-) A-I      intronic
chr13:33695105(-) A-I      intronic
chr13:33764884(-) A-I      intronic
chr13:33797749(-) A-I      intronic
chr13:33766988(-) A-I      intronic
chr13:33696400(-) A-I      intronic
chr13:33766848(-) A-I      intronic
chr13:33735655(-) A-I      intronic
chr13:33696178(-) A-I      intronic
chr13:33695482(-) A-I      intronic
chr13:33695538(-) A-I      intronic
chr13:33823957(-) A-I      intronic
chr13:33695981(-) A-I      intronic
chr13:33695909(-) A-I      intronic
chr13:33731669(-) A-I      intronic
chr13:33695878(-) A-I      intronic
chr13:33695653(-) A-I      intronic
chr13:33695581(-) A-I      intronic
chr13:33731730(-) A-I      intronic
chr13:33696398(-) A-I      intronic
chr13:33761957(-) A-I      intronic
chr13:33764848(-) A-I      intronic
chr13:33710175(-) A-I      intronic
chr13:33731747(-) A-I      intronic
chr13:33695025(-) A-I      intronic
chr13:33824075(-) A-I      intronic
chr13:33764918(-) A-I      intronic
chr13:33764919(-) A-I      intronic
chr13:33764950(-) A-I      intronic
chr13:33764791(-) A-I      intronic
chr13:33766923(-) A-I      intronic
chr13:33824127(-) A-I      intronic
chr13:33700245(-) A-I      Syn:Arg->Arg
chr13:33796609(-) A-I      intronic
chr13:33795331(-) A-I      intronic
chr13:33695674(-) A-I      intronic
chr13:33710176(-) A-I      intronic
chr13:33696176(-) A-I      intronic
chr13:33731725(-) A-I      intronic
chr13:33695883(-) A-I      intronic
chr13:33764872(-) A-I      intronic
chr13:33824091(-) A-I      intronic
chr13:33715060(-) A-I      intronic
chr13:33695512(-) A-I      intronic
chr13:33695303(-) A-I      intronic
chr13:33695622(-) A-I      intronic
chr13:33764506(-) A-I      intronic
chr13:33695888(-) A-I      intronic
chr13:33694944(-) A-I      intronic
chr13:33694009(-) A-I      intronic
chr13:33824121(-) A-I      intronic
chr13:33695629(-) A-I      intronic
chr13:33764474(-) A-I      intronic
chr13:33762097(-) A-I      intronic
chr13:33824065(-) A-I      intronic
chr13:33695573(-) A-I      intronic
chr13:33844359(-) A-I      intronic
chr13:33822371(-) A-I      intronic
chr13:33764552(-) A-I      intronic
chr13:33796449(-) A-I      intronic
chr13:33696394(-) A-I      intronic
chr13:33695536(-) A-I      intronic
chr13:33695001(-) A-I      intronic
chr13:33696177(-) A-I      intronic
chr13:33764888(-) A-I      intronic
chr13:33795385(-) A-I      intronic
chr13:33796463(-) A-I      intronic
chr13:33795452(-) A-I      intronic
chr13:33796510(-) A-I      intronic
chr13:33796388(-) A-I      intronic
chr13:33695459(-) A-I      intronic
chr13:33844297(-) A-I      intronic
chr13:33696153(-) A-I      intronic
chr13:33696068(-) A-I      intronic
chr13:33764862(-) A-I      intronic
chr13:33764901(-) A-I      intronic
chr13:33766793(-) A-I      intronic
chr13:33764522(-) A-I      intronic
chr13:33695815(-) A-I      intronic
chr13:33694938(-) A-I      intronic
chr13:33764821(-) A-I      intronic
chr13:33796564(-) A-I      intronic
chr13:33796409(-) A-I      intronic
chr13:33764792(-) A-I      intronic
chr13:33764861(-) A-I      intronic
chr13:33795525(-) A-I      intronic
chr13:33696209(-) A-I      intronic
chr13:33796565(-) A-I      intronic
chr13:33762111(-) A-I      intronic
chr13:33696152(-) A-I      intronic
chr13:33795457(-) A-I      intronic
chr13:33695593(-) A-I      intronic
chr13:33695620(-) A-I      intronic
chr13:33716329(-) A-I      intronic
chr13:33696151(-) A-I      intronic
chr13:33695610(-) A-I      intronic
chr13:33806233(-) A-I      intronic
chr13:33806224(-) A-I      intronic
chr13:33764820(-) A-I      intronic
chr13:33844342(-) A-I      intronic
chr13:33796332(-) A-I      intronic
chr13:33695460(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED STARD13
chr13:33870284(-) A-I intron -    22327324
chr13:33915608(-) A-I intron -    22327324
chr13:33915611(-) A-I intron -    22327324
chr13:33921583(-) A-I intron -    22327324
chr13:33974330(-) A-I intron -    22327324
chr13:34085278(-) A-I intron -    22327324
chr13:34148757(-) A-I intron -    22327324
chr13:34148771(-) A-I intron -    22327324
chr13:34148848(-) A-I intron -    22327324
chr13:34148857(-) A-I intron -    22327324
chr13:34149145(-) A-I intron -    22327324
chr13:34178767(-) A-I intron -    22327324
chr13:34178850(-) A-I intron -    22327324
chr13:34181566(-) A-I intron -    22327324
chr13:34181572(-) A-I intron -    22327324
chr13:34182317(-) A-I intron -    22327324
chr13:34194008(-) A-I intron -    22327324
chr13:34194034(-) A-I intron -    22327324
chr13:34194037(-) A-I intron -    22327324
chr13:34194111(-) A-I intron -    22327324
chr13:34194150(-) A-I intron -    22327324
chr13:34194158(-) A-I intron -    22327324
chr13:34194517(-) A-I intron -    22327324
chr13:34195647(-) A-I intron -    22327324
chr13:34196221(-) A-I intron -    22327324
chr13:34199541(-) A-I intron -    22327324
chr13:34199669(-) A-I intron -    22327324
chr13:34200018(-) A-I intron -    22327324
chr13:34200021(-) A-I intron -    22327324
chr13:34222330(-) A-I intron -    22327324
chr13:34223578(-) A-I intron -    22327324
chr13:34223633(-) A-I intron -    22327324
chr13:34223636(-) A-I intron -    22327324
chr13:34223637(-) A-I intron -    22327324
chr13:34232328(-) A-I intron -    22327324
chr13:34241002(-) A-I intron -    22327324
chr13:34243784(-) A-I intron -    22327324
chr13:34245032(-) A-I intron -    22327324
chr13:34245791(-) A-I intron -    22327324
chr13:33795331(-) A-G intron -    22484847
chr13:33795385(-) A-G intron -    22484847
chr13:33795452(-) A-G intron -    22484847
chr13:33795457(-) A-G intron -    22484847
chr13:33795525(-) A-G intron -    22484847
chr13:33796510(-) A-G intron -    22484847
chr13:33796564(-) A-G intron -    22484847
chr13:33796565(-) A-G intron -    22484847
chr13:33796609(-) A-G intron -    22484847
chr13:34159881(-) A-G intron -    22484847
chr13:34223585(-) A-G intron -    22484847
chr13:34223591(-) A-G intron -    22484847
chr13:34223632(-) A-G intron -    22484847
chr13:34223633(-) A-G intron -    22484847
chr13:34223636(-) A-G intron -    22484847
chr13:34223637(-) A-G intron -    22484847
chr13:34244436(-) A-G intron -    22484847
chr13:34244448(-) A-G intron -    22484847
chr13:34244467(-) A-G intron -    22484847
chr13:34244485(-) A-G intron -    22484847
chr13:34244974(-) A-G intron -    22484847
chr13:34245017(-) A-G intron -    22484847
chr13:34245032(-) A-G intron -    22484847
chr13:33765012(-) A-G intron -    22484847
chr13:33905486(-) A-C intron -    22484847
chr13:34030464(-) A-G intron -    22484847
chr13:34033144(-) A-G intron -    22484847
chr13:34148757(-) A-G intron -    22484847
chr13:34148770(-) A-G intron -    22484847
chr13:34148771(-) A-G intron -    22484847
chr13:34161100(-) A-G intron -    22484847
chr13:34181566(-) A-G intron -    22484847
chr13:34181572(-) A-G intron -    22484847
chr13:34182081(-) A-G intron -    22484847
chr13:34196047(-) A-G intron -    22484847
chr13:34196079(-) A-G intron -    22484847
chr13:34243846(-) A-G intron -    22484847
chr13:34243852(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase STARD13
chr13:33677513-33677514(-) m6A 3'UTR       27773535
chr13:33677757-33677758(-) m6A 3'UTR       27773535
chr13:33677764-33677765(-) m6A 3'UTR       27773535
chr13:33679470-33679471(-) m6A 3'UTR       24981863//27773535//22608085
chr13:33679500-33679501(-) m6A 3'UTR       24981863//27773535//22608085
chr13:33679558-33679559(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr13:33679634-33679635(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22608085
chr13:33679706-33679707(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr13:33679740-33679741(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr13:33679775-33679776(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr13:33679810-33679811(-) m6A CDS       24284625//24209618//24981863//22608085
chr13:33680900-33680901(-) m6A CDS       24209618//24981863//22608085
chr13:33680923-33680924(-) m6A CDS       22608085
chr13:33680947-33680948(-) m6A CDS       22608085
chr13:33703253-33703254(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:33703276-33703277(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:33703283-33703284(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:33703386-33703387(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr13:33703531-33703532(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr13:33703600-33703601(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:33703607-33703608(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:33703674-33703675(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr13:33703696-33703697(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr13:33703716-33703717(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr13:33703972-33703973(-) m6A CDS       24284625//25456834//24981863
chr13:33704020-33704021(-) m6A CDS       24284625//25456834//24981863
chr13:33704160-33704161(-) m6A CDS       24209618//27773536
chr13:33704247-33704248(-) m6A CDS       -
chr13:33704277-33704278(-) m6A CDS       25456834//27773535
chr13:33704313-33704314(-) m6A CDS       25456834//24981863//27773535
chr13:33704368-33704369(-) m6A CDS       24981863//27773535
chr13:33704380-33704381(-) m6A CDS       24981863//27773535
chr13:33923163-33923164(-) m6A 3'UTR//intron       -
chr13:33923202-33923203(-) m6A 3'UTR//intron       -
chr13:33923227-33923228(-) m6A 3'UTR//intron       -
chr13:33923264-33923265(-) m6A 3'UTR//intron       -
chr13:33924660-33924661(-) m6A 5'UTR       27773536
chr13:33924694-33924695(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-190a-5p
Exosome Hepatocellular carcinoma cell line (HepG2)|Lung epithelial carcinoma cell line (A549)     20615901
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Plasma     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Hepatocellular carcinoma cell line (HepG2)|Lung epithelial carcinoma cell line (A549)     20615901
Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells|Urine     -
STARD13
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-190a-5p
Interactor2: STARD13

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence DIANA-microT//miRDB//Targetscan
Support Database ViRBase

References:


PMID 31570108 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line ARPE-19 human RPE cells Interactor2 expression None
Description Table 1 List of miRNAs that were differentially expressed between EBOV- and mock-infected human RPE cells at 24 h post-infection.Putative target genes in EBOV-infected human RPE cells were predicted from the 15 highly differentially expressed miRNAs using algorithms: 2629 targets by Diana microT; 1799 targets by miRDB; and 14315 targets by TargetScan (Additional file 5).

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