Basic Information:

  VIRBase ID:  

HHID00005068

  Virus:  

Zaire ebolavirus (ZEBOV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-190a-5p:  MIMAT0000458          LRRC31:  NM_001277127     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-190a-5p	LRRC31
miRBase Accession/Entrez ID	MIMAT0000458	79782
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	HEL-S-293

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-190a-5p	rs1018706777 chr15:62823984    A/G rs1369926402 chr15:62823991    G/A rs1555521311 chr15:62823990    G/C rs755866868 chr15:62823986    A/G rs766742872 chr15:62823990    GGTT/G rs777464613 chr15:62823987    T/G rs1228899174 chr15:62823974    T/A rs1281303771 chr15:62823976    T/C rs1350000299 chr15:62823972    G/A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LRRC31	chr3:169560241(-) A-I      intronic chr3:169565200(-) A-I      intronic chr3:169560250(-) A-I      intronic chr3:169580767(-) A-I      intronic chr3:169564272(-) A-I      intronic chr3:169566342(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LRRC31	chr3:169557660-169557661(-) m6A 3'UTR       27773535 chr3:169557692-169557693(-) m6A 3'UTR       27773535 chr3:169557717-169557718(-) m6A 3'UTR       27773535 chr3:169557738-169557739(-) m6A 3'UTR       27773535 chr3:169557768-169557769(-) m6A 3'UTR       27773535 chr3:169557832-169557833(-) m6A 3'UTR//CDS       27773535 chr3:169557919-169557920(-) m6A 3'UTR//CDS       27773535 chr3:169557931-169557932(-) m6A 3'UTR//CDS       27773535 chr3:169571188-169571189(-) m6A exon//intron       27773535 chr3:169571245-169571246(-) m6A exon//intron       27773535 chr3:169571276-169571277(-) m6A exon//intron       27773535 chr3:169571364-169571365(-) m6A exon//intron       27773535 chr3:169587543-169587544(-) m6A CDS//exon       27773535 chr3:169587555-169587556(-) m6A CDS//exon       27773535 chr3:169587573-169587574(-) m6A CDS//exon       27773535 chr3:169587585-169587586(-) m6A CDS//exon       27773535 chr3:169587615-169587616(-) m6A 5'UTR//exon       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-190a-5p	Exosome Hepatocellular carcinoma cell line (HepG2)|Lung epithelial carcinoma cell line (A549)     20615901 Exosome Brain tissue     23382797 Exosome Plasma     23663360 Exosome Plasma     24683445 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Hepatocellular carcinoma cell line (HepG2)|Lung epithelial carcinoma cell line (A549)     20615901 Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells|Urine     -
	LRRC31	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-190a-5p
Interactor2: LRRC31

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	DIANA-microT//miRDB//Targetscan
Support Database	ViRBase

References:

PMID	31570108	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	ARPE-19 human RPE cells	Interactor2 expression	None
Description	Table 1 List of miRNAs that were differentially expressed between EBOV- and mock-infected human RPE cells at 24 h post-infection.Putative target genes in EBOV-infected human RPE cells were predicted from the 15 highly differentially expressed miRNAs using algorithms: 2629 targets by Diana microT; 1799 targets by miRDB; and 14315 targets by TargetScan (Additional file 5).