Basic Information:

  VIRBase ID:  

HHID00004952

  Virus:  

Zaire ebolavirus (ZEBOV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-190a-5p:  MIMAT0000458          ACKR3:  NM_020311     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-190a-5p	ACKR3
miRBase Accession/Entrez ID	MIMAT0000458	57007
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	CMKOR1//CXC-R7//CXCR-7//CXCR7//GPR159//RDC-1//RDC1

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-190a-5p	rs1018706777 chr15:62823984    A/G rs1369926402 chr15:62823991    G/A rs1555521311 chr15:62823990    G/C rs755866868 chr15:62823986    A/G rs766742872 chr15:62823990    GGTT/G rs777464613 chr15:62823987    T/G rs1228899174 chr15:62823974    T/A rs1281303771 chr15:62823976    T/C rs1350000299 chr15:62823972    G/A

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ACKR3	chr2:237489145-237489146(+) m6A CDS       24209618//24981863//22575960 chr2:237489154-237489155(+) m6A CDS       24209618//24981863//22575960 chr2:237489196-237489197(+) m6A CDS       24284625//24209618//24981863//22575960 chr2:237489327-237489328(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr2:237489361-237489362(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr2:237489529-237489530(+) m6A CDS       24209618//22575960 chr2:237489931-237489932(+) m6A CDS       24209618 chr2:237490119-237490120(+) m6A CDS       24209618//25456834//24981863//22575960 chr2:237490239-237490240(+) m6A 3'UTR       24209618//25456834//24981863//22575960 chr2:237490450-237490451(+) m6A 3'UTR       24209618//24981863//22575960 chr2:237490464-237490465(+) m6A 3'UTR       24209618//24981863 chr2:237490533-237490534(+) m6A 3'UTR       24209618//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-190a-5p	Exosome Hepatocellular carcinoma cell line (HepG2)|Lung epithelial carcinoma cell line (A549)     20615901 Exosome Brain tissue     23382797 Exosome Plasma     23663360 Exosome Plasma     24683445 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Hepatocellular carcinoma cell line (HepG2)|Lung epithelial carcinoma cell line (A549)     20615901 Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells|Urine     -
	ACKR3	Cytosol HeLa-S3 cells     - Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-190a-5p
Interactor2: ACKR3

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	DIANA-microT//miRDB//Targetscan
Support Database	ViRBase

References:

PMID	31570108	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	ARPE-19 human RPE cells	Interactor2 expression	None
Description	Table 1 List of miRNAs that were differentially expressed between EBOV- and mock-infected human RPE cells at 24 h post-infection.Putative target genes in EBOV-infected human RPE cells were predicted from the 15 highly differentially expressed miRNAs using algorithms: 2629 targets by Diana microT; 1799 targets by miRDB; and 14315 targets by TargetScan (Additional file 5).