Detail Information

Basic Information:


  VIRBase ID:  

HHID00003314

  Virus:  

Zaire ebolavirus (ZEBOV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-29b-3p:           XXYLT1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-29b-3p XXYLT1
miRBase
Accession/Entrez ID		 MIMAT0000100 152002
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C3orf21

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-29b-3p
rs868994683 chr7:130877473    G/A
rs1390817128 chr1:207802451    A/G
rs773555186 chr1:207802453    A/C
rs773555186 chr1:207802453    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR XXYLT1
chr3:194885681(-) A-I      intronic
chr3:194896878(-) A-I      intronic
chr3:194868177(-) A-I      intronic
chr3:194888237(-) A-I      intronic
chr3:194896858(-) A-I      intronic
chr3:194885711(-) A-I      intronic
chr3:194926420(-) A-I      intronic
chr3:194961250(-) A-I      intronic
chr3:194971149(-) A-I      intronic
chr3:194971129(-) A-I      intronic
chr3:194971126(-) A-I      intronic
chr3:194926409(-) A-I      intronic
chr3:194966084(-) A-I      intronic
chr3:194922787(-) A-I      intronic
chr3:194926480(-) A-I      intronic
chr3:194898612(-) A-I      intronic
chr3:194899903(-) A-I      intronic
chr3:194926443(-) A-I      intronic
chr3:194896918(-) A-I      intronic
chr3:194882718(-) A-I      intronic
chr3:194868216(-) A-I      intronic
chr3:194896950(-) A-I      intronic
chr3:194896883(-) A-I      intronic
chr3:194974290(-) A-I      intronic
chr3:194907696(-) A-I      intronic
chr3:194927012(-) A-I      intronic
chr3:194895340(-) A-I      intronic
chr3:194949288(-) A-I      intronic
chr3:194926444(-) A-I      intronic
chr3:194900022(-) A-I      intronic
chr3:194899986(-) A-I      intronic
chr3:194896962(-) A-I      intronic
chr3:194969613(-) A-I      intronic
chr3:194974230(-) A-I      intronic
chr3:194882696(-) A-I      intronic
chr3:194896968(-) A-I      intronic
chr3:194926944(-) A-I      intronic
chr3:194985724(-) A-I      intronic
chr3:194896838(-) A-I      intronic
chr3:194882524(-) A-I      intronic
chr3:194898380(-) A-I      intronic
chr3:194926904(-) A-I      intronic
chr3:194974501(-) A-I      intronic
chr3:194888220(-) A-I      intronic
chr3:194926371(-) A-I      intronic
chr3:194900006(-) A-I      intronic
chr3:194949489(-) A-I      intronic
chr3:194895280(-) A-I      intronic
chr3:194926370(-) A-I      intronic
chr3:194868187(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED XXYLT1
chr3:194968767(-) A-G intron -    22484847
chr3:194840016(-) G-T intron -    22484847
chr3:194840020(-) T-G intron -    22484847
chr3:194887480(-) T-C intron -    22484847
chr3:194887591(-) T-C intron -    22484847
chr3:194887597(-) T-C intron -    22484847
chr3:194896963(-) A-G intron -    22484847
chr3:194898567(-) T-C intron -    22484847
chr3:194907696(-) A-G intron -    22484847
chr3:194926371(-) A-G intron -    22484847
chr3:194926904(-) A-G intron -    22484847
chr3:194943886(-) G-A intron -    22484847
chr3:194987147(-) G-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase XXYLT1
chr3:194789185-194789186(-) m6A 3'UTR       27773535
chr3:194789192-194789193(-) m6A 3'UTR       27773535
chr3:194789263-194789264(-) m6A 3'UTR       27773535
chr3:194789302-194789303(-) m6A 3'UTR       27773535
chr3:194789313-194789314(-) m6A 3'UTR       27773535
chr3:194789514-194789515(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr3:194789565-194789566(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194789628-194789629(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194789637-194789638(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194789646-194789647(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194789658-194789659(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194789674-194789675(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194789680-194789681(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194789713-194789714(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194789732-194789733(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194789757-194789758(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr3:194789811-194789812(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:194789835-194789836(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:194789843-194789844(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:194790030-194790031(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:194790035-194790036(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:194790089-194790090(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr3:194790105-194790106(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr3:194790205-194790206(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194790239-194790240(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194790267-194790268(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790311-194790312(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790346-194790347(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790377-194790378(-) m6A 3'UTR//exon       24209618
chr3:194790381-194790382(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790396-194790397(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790447-194790448(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790471-194790472(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790540-194790541(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194790567-194790568(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194790579-194790580(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194790619-194790620(-) Am CDS//exon       -
chr3:194790630-194790631(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790636-194790637(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790738-194790739(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27773536//22575960//22608085
chr3:194790802-194790803(-) m6A 3'UTR//CDS//exon       24284625
chr3:194790810-194790811(-) m6A 3'UTR//CDS//exon       24284625
chr3:194806635-194806636(-) m6A exon//intron       24284625
chr3:194901154-194901155(-) m6A 5'UTR//exon//intron       27773535
chr3:194901203-194901204(-) m6A 5'UTR//exon//intron       -
chr3:194904208-194904209(-) m6A exon//intron       -
chr3:194904256-194904257(-) m6A exon//intron       -
chr3:194904297-194904298(-) m6A exon//intron       -
chr3:194904306-194904307(-) m6A exon//intron       -
chr3:194991494-194991495(-) m6A CDS       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-29b-3p
Cytoplasm HeLa cells     28185889
Cytoplasm Hepatic carcinoma cells (Huh-7)     29253196
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Exosome Urine     26576778
Exosome HCC tissues     30542726
Exosome Saliva     19627513
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Human mast cell line (HMC-1)     24009880
Exosome Breast milk|Epithelial cells|Seminal fluid|Tongue tissue     -
Microvesicle Seminal plasma     23539611
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Nucleus Hela cells|NIH-3T3 cells     17204650
Nucleus HeLa cells     28185889
Nucleus Hepatic carcinoma cells (Huh-7)     29253196
Nucleus HeLa cells     30006350
Nucleus Nasopharyngeal carcinoma cells     20498841
XXYLT1
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function
ncDR hsa-miR-29b-3p
Phosphine, 1,2-ethanediylbis[bis[2-(methylthio)phenyl]- 397601 Drug resistant
Phenyl gallate 333279 Drug resistant
N-[(4R)-4-[(3R,5R,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-Tris(3-aminopropoxy)-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentyl]octan-1-amine 24205348 Drug sensitive
8-Hydroxyquinoline 1923 Drug resistant
(R)-(2,8-Bis(trifluoromethyl)quinolin-4-yl)((S)-piperidin-2-yl)methanol hydrochloride 18660697 Drug sensitive
Acid Alizarine Red B 135565636 Drug resistant
2-Acetylimidazo[4,5-b]pyridin 4 tolyl 3 thiosemicarbazone 135440014 Drug resistant
1,8-octanediamine, n,n'-di-9-acridinyl- (9ci) - Drug resistant
4-carbo-1-thiazolidine-3-o-gluconyl-.gamma.-lactone - Drug resistant
naphth[2,3-d]oxazol-9-one, 2-methyl-4-(phenylimino)- - Drug sensitive
Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-29b-3p
Formaldehyde 712 Drug interaction    RC00001120
Oxaliplatine 6857599 Drug interaction    RC00001140
Gemcitabine 60750 Drug interaction    RC00001131
Progesterone 5994 Drug interaction    RC00001126
D-Glucose 5793 Drug interaction    RC00001125
Eloxatine 5310940 Drug interaction    RC00001139
Imatinib 5291 Drug interaction    RC00001124
Decitabine 451668 Drug interaction    RC00001137
Docosahexaenoic acid 445580 Drug interaction    RC00001136
Trichostatin A 444732 Drug interaction    RC00001135
Cyclopamine 442972 Drug interaction    RC00001134
Bortezomib 387447 Drug interaction    RC00001133
Etoposide 36462 Drug interaction    RC00001130
Paclitaxel 36314 Drug interaction    RC00001129
5-Fluorouracil 3385 Drug interaction    RC00001123
Enoxacin 3229 Drug interaction    RC00001122
Doxorubicin 31703 Drug interaction    RC00001128
cis-Diaminedichloroplatinum 2767 Drug interaction    RC00001121
Tamoxifen 2733526 Drug interaction    RC00001138
Ixazomib 25183872 Drug interaction    RC00001144
Navitoclax 24978538 Drug interaction    RC00001143
Ampligen & InterferonalphaA 16197265 Drug interaction    RC00001142
Leucovorin 135403648 Drug interaction    RC00001145
Ginsenoside Rh2 119307 Drug interaction    RC00001132
Carfilzomib 11556711 Drug interaction    RC00001141
Androstanolone 10635 Drug interaction    RC00001127
Chemotherapy - Drug interaction    RC00001146
5-aza-2'-deoxycytidine (5-Aza-CdR) + trichostatin A(TSA) - Drug interaction    RC00001147
Glucocorticoid - Drug interaction    RC00001148
Testosterone + 1,25-Dihydroxyvitamin D3 - Drug interaction    RC00001149
Trastuzumab - Drug interaction    RC00001150
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-29b-3p
Bortezomib 387447       30728351

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-29b-3p
Interactor2: XXYLT1

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence Targetscan
Support Database ViRBase

References:


PMID 31570108 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line ARPE-19 human RPE cells Interactor2 expression None
Description Table 1 List of miRNAs that were differentially expressed between EBOV- and mock-infected human RPE cells at 24 h post-infection.Putative target genes in EBOV-infected human RPE cells were predicted from the 15 highly differentially expressed miRNAs using algorithms: 2629 targets by Diana microT; 1799 targets by miRDB; and 14315 targets by TargetScan (Additional file 5).

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