Detail Information

Basic Information:


  VIRBase ID:  

HHID00000796

  Virus:  

Porcine circovirus 2 (PCV2)

  Host:  

Sus scrofa

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      ssc-miR-155-5p:           GATM:      

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Interactor Information:


Interactor1 Interactor2
Symbol ssc-miR-155-5p GATM
miRBase
Accession/Entrez ID		 MIMAT0022959 100126844
Organism Sus scrofa Sus scrofa
Category miRNA mRNA
Alias - AGAT

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GATM
chr1:140860088-140860089(-) m6A CDS       28267806
chr1:140860112-140860113(-) m6A CDS       28267806
chr1:140861788-140861789(-) m6A 5'UTR       28267806

Interaction Network (The top 100 interactions):


Interactor1: ssc-miR-155-5p
Interactor2: GATM

Evidence Support:


Weak-Evidence Small RNA sequencing
Prediction-Evidence miRecords
Support Database ViRBase

References:


PMID 31766254 Target region None
Source ViRBase Interactor1 expression Upregulation
Tissue or cell line PK15 cells Interactor2 expression Upregulation
Description As shown in Figure 8, nine miRNA nodes and 82 mRNA nodes composed the miRNA-mRNA network.

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