Basic Information:
VIRBase ID: HHID00000350
Virus: Porcine reproductive and respiratory syndrome virus (PRRSV)
Host: Sus scrofa
Confidence Score: 0.6666
Interaction Type: Host-Host interaction
Interactor Information:
Interactor1
Interactor2
Symbol
ssc-miR-122a-5p
ZCCHC3
miRBase Accession/Entrez ID
ssc-miR-122a-5p
100519451
Organism
Sus scrofa
Sus scrofa
Category
miRNA
mRNA
Alias
-
-
Interaction Network (The top 100 interactions) :
Interactor1: ssc-miR-122a-5p
Interactor2: ZCCHC3
Evidence Support:
Weak-Evidence
RNA-Seq//Small RNA sequencing
Prediction-Evidence
miRanda//RNAHybrid
Support Database
ViRBase
References:
PMID
32785889
Target region
None
Source
ViRBase
Interactor1 expression
None
Tissue or cell line
MARC-145 cells
Interactor2 expression
None
Description
The target genes of DEmiRs were predicted using miRanda and RNAhybrid softwares. 390 potential target genes that were both differentially expressed in RNA-seq and predicted by softwares were identified (Supplementary Table 3).