Detail

Basic Information:

VIRBase ID:

HHID00000127

Virus:

Porcine reproductive and respiratory syndrome virus (PRRSV)

Host:

Sus scrofa

Confidence Score:

0.6666

Interaction Type:

Host-Host interaction

Interactor Information:

	Interactor1	Interactor2
Symbol	ssc-miR-210	DLL1
miRBase Accession/Entrez ID	MIMAT0007761	100620481
Organism	Sus scrofa	Sus scrofa
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource

Symbol

ModificationPosition

Type

Genomic Context

PMID

RMBase

DLL1

chr1:280619-280620(+)	m6A	5'UTR	28267806
chr1:280631-280632(+)	m6A	5'UTR	28267806
chr1:286336-286337(+)	m6A	CDS	28267806
chr1:286446-286447(+)	m6A	CDS	28267806
chr1:286625-286626(+)	m6A	CDS	28267806
chr1:288516-288517(+)	m6A	CDS	28267806
chr1:288545-288546(+)	m6A	CDS	28267806
chr1:288686-288687(+)	m6A	CDS	28267806
chr1:288692-288693(+)	m6A	CDS	28267806
chr1:288699-288700(+)	m6A	CDS	28267806
chr1:288729-288730(+)	m6A	CDS	28267806
chr1:288768-288769(+)	m6A	CDS	28267806
chr1:288786-288787(+)	m6A	CDS	28267806
chr1:288864-288865(+)	m6A	CDS	28267806
chr1:288891-288892(+)	m6A	CDS	28267806
chr1:289400-289401(+)	m6A	CDS	28267806
chr1:289424-289425(+)	m6A	CDS	28267806
chr1:289683-289684(+)	m6A	3'UTR	28267806
chr1:289782-289783(+)	m6A	3'UTR	28267806
chr1:289820-289821(+)	m6A	3'UTR	28267806
chr1:289906-289907(+)	m6A	3'UTR	28267806

RNA Localization:

Resource

Symbol

Subcellular Localization

Tissue or Cell Line

PMID

RNALocate

ssc-miR-210

Exosome

Porcine milk

24499489

Interaction Network (The top 100 interactions):

Interactor1: ssc-miR-210

Interactor2: DLL1

Evidence Support:

Weak-Evidence	RNA-Seq//Small RNA sequencing
Prediction-Evidence	miRanda//RNAHybrid
Support Database	ViRBase

References:

PMID	32785889	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	MARC-145 cells	Interactor2 expression	None
Description	The target genes of DEmiRs were predicted using miRanda and RNAhybrid softwares. 390 potential target genes that were both differentially expressed in RNA-seq and predicted by softwares were identified (Supplementary Table 3).