Detail Information

Basic Information:


  VIRBase ID:  

HHID00000059

  Virus:  

Porcine reproductive and respiratory syndrome virus (PRRSV)

  Host:  

Sus scrofa

  Confidence Score:  

0.6666

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol ssc-miR-7-5p ZBTB22
miRBase
Accession/Entrez ID		 MIMAT0002141 100157038
Organism Sus scrofa Sus scrofa
Category miRNA mRNA
Alias - -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ssc-miR-7-5p
Exosome Porcine milk     24499489

Interaction Network (The top 100 interactions):


Interactor1: ssc-miR-7-5p
Interactor2: ZBTB22

Evidence Support:


Weak-Evidence RNA-Seq//Small RNA sequencing
Prediction-Evidence miRanda//RNAHybrid
Support Database ViRBase

References:


PMID 32785889 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line MARC-145 cells Interactor2 expression None
Description The target genes of DEmiRs were predicted using miRanda and RNAhybrid softwares. 390 potential target genes that were both differentially expressed in RNA-seq and predicted by softwares were identified (Supplementary Table 3).

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