Statistics
We provide statistics information about 'Interaction Type Distribution' and 'Species Distribution' of all entries involved in RNAInter, 'Molecular Type Distribution' of all Interactors referred in RNAInter.
- Number of entries: 41,322,577
- Number of species: 154
- Number of RNA Symbols: 381,319
- Number of Interactors Symbols: 457,990
Note
- Click each legend to hide its type share and recalculate the rest proportion distribution.
- Pie plot shows the proportion distribution of each category, bar plot shows the concrete count of each category.
Detection methods associated RNA Interactome entries
Strong detection methods | Weak detection methods | Prediction detection methods |
---|---|---|
3C | 454 sequencing | Bayesian target prediction algorithm |
3C-qChIP | Array | catRAPID |
3D-DSL | ATAC-seq | cRep |
3D-FISH | Bisulfite genomic-sequencing | Cupid |
3RACE | BS-seq | DIANA-microT |
3UTR indicator assay | CHART-seq | Inparanoid |
3UTR reporter assay | ChIP-chip | JTarget |
4C | ChIP-seq | MicroInspector |
5RACE | ChIRP-seq | miRanda |
Affinity technology | ChOP-seq | miRTar |
Ago2-IP | ChRIP-seq | MirTarget |
AGO-CLIP | CLASH | MirTarget2 |
AGO-IP | CLEAR-CLIP | miRWalk |
Allele-specific ChIP | CLIP-seq | MREdictor |
ASO assay | dCLIP | PARalyzer |
ATPase assay | Deep sequencing | PicTar |
Beta-galactosidase activity assay | Degradome-seq | pirScan |
BiFC | diMARGI | PITA |
Bio-plex assay | DNase-seq | psRNATarget |
Biotin pull-down assay | eCLIP | Rep |
BrdU incorporation assay | FLASH | RNA22 |
BSP assay | Genome-wide transcriptome sequencing | RNAhybrid |
BS-PCR | GMUCT | RPISeq |
Bulge-loop miRNA RT-PCR | GRO-seq | STarMir |
CHART | High-throughput sequencing | TargetScan |
CHART-MS | HiSeq | TargetSpy |
Chemosensitivity assay | HITS-CLIP | Vita |
ChIP | iCLIP | |
ChIP-3C | LIGR-seq | |
ChIP-PCR | MARIO | |
ChIP-qPCR | MeDIP-seq | |
ChIRP | Microarray | |
ChIRP-MS | miRNA array | |
ChIRP-PCR | miRNA-seq | |
ChIRP-qPCR | NGS | |
ChOP | PAR-CLIP | |
ChRIP | PARE | |
Chromatin accessibility assay | PARIS | |
Chromatography technology | pxMARGI | |
circRIP | RACE-seq | |
Cleavage assay | RAP-seq | |
CLIP | RIA-seq | |
CLIP-qPCR | RIP-Chip | |
Co-FISH | RIPiT-seq | |
Co-IP | RIP-seq | |
Copurification | RISC-seq | |
Cross-linking assay | RNA CaptureSeq | |
DNA-FISH | RNA ChIP-on-chip | |
DNase I footprinting | RNA-seq | |
Dot-Blot assay | sCLIP-seq | |
Drug assay | Sequencing | |
Drug efflux assay | Small RNA Ultrahigh throughput sequencing | |
Dual fluorescent reporter assay | smRNA-seq | |
Dual luciferase reporter assay | Solexa sequencing | |
ELISA | SPLASH | |
EMSA | sRNA-seq | |
Enzyme assay | TaqMan array | |
EPR | TaqMan microRNA array | |
Filter binding assay | TaqMan miRNA array | |
Filter trap assay | Tiling array | |
FISH | uvCLAP | |
FISH-immuno | ||
Fluorescence reporter assay | ||
Footprinting | ||
FRAP | ||
Gel electrophoresis | ||
Gel zymography | ||
Hi-C | ||
HPLC | ||
HRR assay | ||
HuR-IP | ||
Hybrid-PCR | ||
ICC | ||
iDRiP | ||
IFA | ||
IFS | ||
IHC | ||
IIF | ||
Immunoassay | ||
Immunoblot | ||
Indicator assay | ||
Inhibition analysis | ||
IP | ||
ISH | ||
ITC | ||
Label transfer technique | ||
LC/MS | ||
LC-MS/MS | ||
Luciferase reporter assay | ||
Mass spectrometry | ||
MeDIP | ||
meRIP-qPCR | ||
Microscopy | ||
miR-Mask assay | ||
miRNA assay | ||
miRNA qPCR | ||
miRNA RT-PCR | ||
mRNA decay assay | ||
MS2-RIP | ||
MSP | ||
MTS assay | ||
MTT assay | ||
Mutation analysis | ||
NMR | ||
Northern blot | ||
Northern hybridization | ||
PAGE | ||
PCR | ||
Primer extension assay | ||
Probe interaction assay | ||
Proximity ligation assay | ||
pSILAC | ||
Pull-down assay | ||
qChIP | ||
qPCR | ||
qRT-PCR | ||
RACE | ||
RACE-PCR | ||
RAKE analysis | ||
RAP | ||
RAP-MS | ||
REMSA | ||
Reporter assay | ||
Rescue assay | ||
RFLP | ||
RIP | ||
RIP-PCR | ||
RIP-qPCR | ||
RISC-Co-IP | ||
RISC-IP | ||
RLM-RACE | ||
RNA blot | ||
RNA chromatography | ||
RNA Co-IP | ||
RNA footprinting assay | ||
RNA pull-down assay | ||
RNA TRAP | ||
RNA-ChIP | ||
RNA-FISH | ||
RNA-protein pulldown assay | ||
RNAscope | ||
RNase-ChIP | ||
RPA | ||
RQ-PCR | ||
RT2-PCR | ||
RTCA | ||
RT-PCR | ||
SDS-PAGE | ||
Semi qPCR | ||
Semi qRT-PCR | ||
SILAC | ||
smFISH | ||
Southern blot | ||
Stem-loop qPCR | ||
Stem-loop qRT-PCR | ||
Stem-loop RT-PCR | ||
Strand specific RT-PCR | ||
SYBR green PCR | ||
SYBR green qPCR | ||
TaqMan microRNA assay | ||
TaqMan miRNA assay | ||
TaqMan miRNA RT-PCR | ||
TaqMan qPCR | ||
TaqMan qRT-PCR | ||
TaqMan RT-PCR | ||
TLDA | ||
Toeprinting assay | ||
TRAP | ||
Triplex capture assay | ||
Two hybrid | ||
U.V.-Crosslinking | ||
Viral infectivity assay | ||
Western blot | ||
WST-1 assay | ||
WST-8 assay | ||
X-ray crystallography |