Statistics

We provide statistics information about 'Interaction Type Distribution' and 'Species Distribution' of all entries involved in RNAInter, 'Molecular Type Distribution' of all Interactors referred in RNAInter.

  • Number of entries:   41,322,577
  • Number of species:   154
  • Number of RNA Symbols:   381,319
  • Number of Interactors Symbols:   457,990

Note

  • Click each legend to hide its type share and recalculate the rest proportion distribution.
  • Pie plot shows the proportion distribution of each category, bar plot shows the concrete count of each category.

Detection methods associated RNA Interactome entries

Strong detection methodsWeak detection methodsPrediction detection methods
3C454 sequencingBayesian target prediction algorithm
3C-qChIPArraycatRAPID
3D-DSLATAC-seqcRep
3D-FISHBisulfite genomic-sequencingCupid
3RACEBS-seqDIANA-microT
3UTR indicator assayCHART-seqInparanoid
3UTR reporter assayChIP-chipJTarget
4CChIP-seqMicroInspector
5RACEChIRP-seqmiRanda
Affinity technologyChOP-seqmiRTar
Ago2-IPChRIP-seqMirTarget
AGO-CLIPCLASHMirTarget2
AGO-IPCLEAR-CLIPmiRWalk
Allele-specific ChIPCLIP-seqMREdictor
ASO assaydCLIPPARalyzer
ATPase assayDeep sequencingPicTar
Beta-galactosidase activity assayDegradome-seqpirScan
BiFCdiMARGIPITA
Bio-plex assayDNase-seqpsRNATarget
Biotin pull-down assayeCLIPRep
BrdU incorporation assayFLASHRNA22
BSP assayGenome-wide transcriptome sequencingRNAhybrid
BS-PCRGMUCTRPISeq
Bulge-loop miRNA RT-PCRGRO-seqSTarMir
CHARTHigh-throughput sequencingTargetScan
CHART-MSHiSeqTargetSpy
Chemosensitivity assayHITS-CLIPVita
ChIPiCLIP
ChIP-3CLIGR-seq
ChIP-PCRMARIO
ChIP-qPCRMeDIP-seq
ChIRPMicroarray
ChIRP-MSmiRNA array
ChIRP-PCRmiRNA-seq
ChIRP-qPCRNGS
ChOPPAR-CLIP
ChRIPPARE
Chromatin accessibility assayPARIS
Chromatography technologypxMARGI
circRIPRACE-seq
Cleavage assayRAP-seq
CLIPRIA-seq
CLIP-qPCRRIP-Chip
Co-FISHRIPiT-seq
Co-IPRIP-seq
CopurificationRISC-seq
Cross-linking assayRNA CaptureSeq
DNA-FISHRNA ChIP-on-chip
DNase I footprintingRNA-seq
Dot-Blot assaysCLIP-seq
Drug assaySequencing
Drug efflux assaySmall RNA Ultrahigh throughput sequencing
Dual fluorescent reporter assaysmRNA-seq
Dual luciferase reporter assaySolexa sequencing
ELISASPLASH
EMSAsRNA-seq
Enzyme assayTaqMan array
EPRTaqMan microRNA array
Filter binding assayTaqMan miRNA array
Filter trap assayTiling array
FISHuvCLAP
FISH-immuno
Fluorescence reporter assay
Footprinting
FRAP
Gel electrophoresis
Gel zymography
Hi-C
HPLC
HRR assay
HuR-IP
Hybrid-PCR
ICC
iDRiP
IFA
IFS
IHC
IIF
Immunoassay
Immunoblot
Indicator assay
Inhibition analysis
IP
ISH
ITC
Label transfer technique
LC/MS
LC-MS/MS
Luciferase reporter assay
Mass spectrometry
MeDIP
meRIP-qPCR
Microscopy
miR-Mask assay
miRNA assay
miRNA qPCR
miRNA RT-PCR
mRNA decay assay
MS2-RIP
MSP
MTS assay
MTT assay
Mutation analysis
NMR
Northern blot
Northern hybridization
PAGE
PCR
Primer extension assay
Probe interaction assay
Proximity ligation assay
pSILAC
Pull-down assay
qChIP
qPCR
qRT-PCR
RACE
RACE-PCR
RAKE analysis
RAP
RAP-MS
REMSA
Reporter assay
Rescue assay
RFLP
RIP
RIP-PCR
RIP-qPCR
RISC-Co-IP
RISC-IP
RLM-RACE
RNA blot
RNA chromatography
RNA Co-IP
RNA footprinting assay
RNA pull-down assay
RNA TRAP
RNA-ChIP
RNA-FISH
RNA-protein pulldown assay
RNAscope
RNase-ChIP
RPA
RQ-PCR
RT2-PCR
RTCA
RT-PCR
SDS-PAGE
Semi qPCR
Semi qRT-PCR
SILAC
smFISH
Southern blot
Stem-loop qPCR
Stem-loop qRT-PCR
Stem-loop RT-PCR
Strand specific RT-PCR
SYBR green PCR
SYBR green qPCR
TaqMan microRNA assay
TaqMan miRNA assay
TaqMan miRNA RT-PCR
TaqMan qPCR
TaqMan qRT-PCR
TaqMan RT-PCR
TLDA
Toeprinting assay
TRAP
Triplex capture assay
Two hybrid
U.V.-Crosslinking
Viral infectivity assay
Western blot
WST-1 assay
WST-8 assay
X-ray crystallography

Contact wangdong@ems.hrbmu.edu.cn
© Department of Bioinformatics, Southern Medical University