RAIDv1.01 reorganized the v1.0 data with the following update: a) systematically revised the consistent naming for diverse ncRNAs; b) expanded several species (Mus musculus, Rattus norvegicus, Saccharomyces cerevisiae, etc.).
interaction in RAID v1.01 (2015/10)
All RNA-RNA interactions: RNA-RNA-v1.01
All RNA-Protein interactions: RNA-Protein-v1.01
interaction in RAID v1.0 (2014/01)
All RNA-RNA interactions: RNA-RNA-v1.0
All RNA-Protein interactions: RNA-Protein-v1.0
All programs used to retrieve the references: Program scripts
RAID is offered to the public as a freely resource. If you make use of significant information of the database, please acknowledge the RAID database in any resulting publications.
http://www.rna-society.org/raid/api.php?type=keyword&&keywords=**&&interacttype=**[&&fuzzey=**]
http://www.rna-society.org/raid/api.php?type=category&&firstCategory=**&&secondCategory=**
http://www.rna-society.org/raid/api.php?type=method&&method=**
Valid Values | Note |
---|---|
keyword | Searching by RNA and protein symbols |
category | Searching by RNA/Protein category |
method | Searching by validated methods |
Valid Values | Note |
---|---|
rri | Searching the RNA-RNA interactions |
rpi | Searching the RNA-Protein interactions |
all | Searching the RNA-RNA/RNA-Protein interactions |
For "firstCategory/secondCategory" tag:
Valid Values |
---|
miRNA |
lncRNA |
mRNA |
protein |
snoRNA |
snRNA |
sRNA |
Valid Values |
---|
ChIP |
PCR |
Reporter assay |
Microarray |
Western blot |
Immunofluorescence |
Luciferase reporter assay |
X-ray crystallography |
... |
Note: RAID supports fuzzy queries, users are able to obtain more result by streamlining input, eg: just input "Luciferase" instead of "Luciferase reporter assay"
Searching for RNA-RNA interactions which include PTENP1:
http://www.rna-society.org/raid/api.php?type=keyword&&keywords=PTENP1&&interacttype=rri
Searching for all of the interactions between miRNA and lncRNA
http://www.rna-society.org/raid/api.php?type=category&&firstCategory=miRNA&&secondCategory=lncRNA
Searching for all of the interactions which discovered Luciferase reporter assay
http://www.rna-society.org/raid/api.php?type=method&&method=Luciferase reporter assay