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Download the RAID database

RAIDv1.01 reorganized the v1.0 data with the following update: a) systematically revised the consistent naming for diverse ncRNAs; b) expanded several species (Mus musculus, Rattus norvegicus, Saccharomyces cerevisiae, etc.). 


 interaction in RAID v1.01 (2015/10)

All RNA-RNA interactions: RNA-RNA-v1.01

All RNA-Protein interactions: RNA-Protein-v1.01

 interaction in RAID v1.0 (2014/01)

All RNA-RNA interactions: RNA-RNA-v1.0

All RNA-Protein interactions: RNA-Protein-v1.0

 All programs used to retrieve the references: Program scripts

RAID is offered to the public as a freely resource. If you make use of significant information of the database, please acknowledge the RAID database in any resulting publications.

RAID API


URL form

http://www.rna-society.org/raid/api.php?type=keyword&&keywords=**&&interacttype=**[&&fuzzey=**]
http://www.rna-society.org/raid/api.php?type=category&&firstCategory=**&&secondCategory=**
http://www.rna-society.org/raid/api.php?type=method&&method=**

  • type=Search type
  • keywords=The molecular that the user want to search
  • interacttype=The interaction type included in RAID
  • firstCategory/secondCategory=The category of RNA/Protein
  • method=The method that the user want to search
  • Specification of Tag Values

    For "type" tag:

    Valid ValuesNote
    keywordSearching by RNA and protein symbols
    categorySearching by RNA/Protein category
    methodSearching by validated methods

    For "interacttype" tag:

    Valid ValuesNote
    rriSearching the RNA-RNA interactions
    rpiSearching the RNA-Protein interactions
    allSearching the RNA-RNA/RNA-Protein interactions

    For "firstCategory/secondCategory" tag:

    Valid Values
    miRNA
    lncRNA
    mRNA
    protein
    snoRNA
    snRNA
    sRNA

    For "method" tag:

    Valid Values
    ChIP
    PCR
    Reporter assay
    Microarray
    Western blot
    Immunofluorescence
    Luciferase reporter assay
    X-ray crystallography
    ...

    Note: RAID supports fuzzy queries, users are able to obtain more result by streamlining input, eg: just input "Luciferase" instead of "Luciferase reporter assay"

    Examples

    Searching for RNA-RNA interactions which include PTENP1:
    http://www.rna-society.org/raid/api.php?type=keyword&&keywords=PTENP1&&interacttype=rri

    Searching for all of the interactions between miRNA and lncRNA
    http://www.rna-society.org/raid/api.php?type=category&&firstCategory=miRNA&&secondCategory=lncRNA

    Searching for all of the interactions which discovered Luciferase reporter assay
    http://www.rna-society.org/raid/api.php?type=method&&method=Luciferase reporter assay