错误信息提示:
错误号:12142

错误原因:Table 'hscellor_ncrdeathdb.ncrnadeathmiRNA2targetDB' doesn't exist

错误sql语句:
select * from ncrnadeathmiRNA2targetDB where mirnaSymbol like '%miR-1' and taxid like '10090'
——错误记录被保存!

ncRNADetailInformation
  • Detail Information
  • Functional analysis
miRNA namepre-miRNA familypre-miRNA Sequencemature-miRNAmature sequencepre-miRNA description
miR-1
MI0000652 MIPF0000038 UCAGAGCACAUACUUCUUUAUGUACCCAUAUGAACAUUCAGUGCUAUGGAAUGUAAAGAAGUAUGUAUUUUG MIMAT0000123

mmu-miR-1a-3p
UGGAAUGUAAAGAAGUAUGUAU Lagos-Quintana et al. reported the cloning of miR-1b, miR-1c andmiR-1d. The mature processed miR sequences are identical apart from the3' residues (A in mir-1b, C in mir-1c and UU in mir-1d). The 3' residuesof both miR-1b and miR-1c conflict with the predicted stem-loop precursorsequence shown here and these sequences are not found in currentassemblies of human and mouse genomes. It is suggested that polyApolymerase may add 1-3 nts to the 3' end of the mature transcript (TomTuschl, pers. comm.). The common 21 nts of the 3 reported miR sequenceshave been rationalised here and named miR-1. There are 2 pairs oforthologous putative hairpin precursor structures named mir-1-1 (humanMIR:MI0000651, mouse MIR:MI0000139), and mir-1-2 (human MIR:MI0000437,mouse MIR:MI0000652). The mature sequence shown here represents the mostcommonly cloned form from large-scale cloning studies .
MI0006283 MIPF0000038 UUCCUUUAGCUUCUUCUUGGCGGACAUUACCUACCCAAAAUACAUACUUCUUUACAUUCCAUAGCACUGAAUGUUCAUAUGGGUACAUAAAGAAGUAUGUGCUCUGAGUAGGCACUCCUGCG MIMAT0005835

mmu-miR-1b-5p
UACAUACUUCUUUACAUUCCA Calabrese et al. report the detection of mature products from theantisense strand of mouse mir-1-2, at lower abundance than sense miR-1.
link to database TargetScanS 6.2 | MicroCosm | microRNA.org | miRNAMap 2.0
Interacted genes from RAID,miRTarBase
Calm3,Arhgap32,Mef2a,Hspd1,Kcnj2,Pax3,Calm2,Calm1,Bcl2,Anxa5,Hspa4,Hcn4,Hcn2,Gata4,Igf1
more » Calm3,Arhgap32,Mef2a,Hspd1,Kcnj2,Pax3,Calm2,Calm1,Bcl2,Anxa5,Hspa4,Hcn4,Hcn2,Gata4,Igf1
KEGG pathways enriched for interacted genes
pathway namepathway descriptiontarget genes enrich in pathwayp-value
rno05214 Glioma Calm3,Igf1,Calm2,Calm1, 5.34E-1
rno05410 Hypertrophic cardiomyopathy (HCM) Igf1,Slc8a1, 7.29E-1
rno05414 Dilated cardiomyopathy Igf1,Slc8a1, 7.79E-1
rno05215 Prostate cancer Igf1,Bcl2, 7.79E-1
rno04114 Oocyte meiosis Calm3,Igf1,Calm2,Calm1, 9.54E-1
Gene ontology terms enriched for interacted genes
GO termsGO terms descriptiontarget genes enrich in GO termp-value
GO:0035295 tube development Pax3,Igf1,Gata4,Bcl2, 1.63E-2
GO:0008283 cell proliferation Pax3,Igf1,Hspd1,Bcl2, 1.73E-2
GO:0051924 regulation of calcium ion transport Igf1,Slc8a1,Bcl2, 1.86E-2
GO:0009408 response to heat Hspa4,Hspd1,Bcl2, 2.04E-2
GO:0010035 response to inorganic substance Calm3,Slc8a1,Hspd1,Calm2,Calm1,Bcl2, 2.04E-2
KEGG pathways and Gene Ontology terms enriched for the interacted genes of ncRNA from RAID and miRTarBase.
disease namerelated genesp-value