Basic information:

Untranslated mRNA: Sponge mRNA

Related IDs	cncRNA ID	CNC_M_002035
	Name	Ugt2b34
	Gene ID	100727
Location	Coordinate(Strand)	5:86889767-86906937(-)
Locus Sequence
Organism	Mus musculus

Evidence support:

  

In vivo/vitro assay	In vitro assay and in vivo assay (Mouse)
Low-throughput method	qRT-PCR
High-throughput method	RNA footprint;High-throughput sequencing of RNA isolated by cross-linking immunoprecipitation (HITS-CLIP)
Tissue/Cell	Liver
Description of experimental evidence	The mRNA was detected by HITS-CLIP and RNA footprint in mouse liver, which can communicate with other mRNAs by shared common microRNA regulatory elements.

Orthologues:

  

Human	/
Chimpanzee	/
Drosophila	FBgn0032713   FBgn0027070   FBgn0027074   FBgn0015663   FBgn0040255   FBgn0040253   FBgn0051002   FBgn0026314   FBgn0026315   FBgn0039086   FBgn0039087   FBgn0039085   FBgn0040252   FBgn0040250   FBgn0040259   FBgn0040257   FBgn0040251   FBgn0036842   FBgn0038082   FBgn0038083   FBgn0026756   FBgn0026755   FBgn0040262   FBgn0026754   FBgn0040261   FBgn0040260   FBgn0031887   FBgn0042179   FBgn0038886   FBgn0034605   FBgn0027073
Zebrafish	ENSDARG00000011537   ENSDARG00000039501   ENSDARG00000051940

References:

  

PMID

23597149

Description

We incorporated RNA-seq quantification of total mRNA to identify expression-weighted Ago footprints, and developed a microRNA regulatory element (MRE) prediction algorithm that represents a greater than 20-fold refinement over computational methods alone. These high confidence MREs were used to generate candidate 'competing endogenous RNA' (ceRNA) networks.The data were collected from supplemently tables.

Related Interactions:

  

  

   Notes: You can browse the related interactions in RNAinter by click the above link (since the interaction entries are too much to show here).