Basic information:

Untranslated mRNA: Sponge mRNA

Related IDs	cncRNA ID	CNC_M_002033
	Name	Uba52
	Gene ID	22186
Location	Coordinate(Strand)	4:3973092-3973595(-)
Locus Sequence
Organism	Mus musculus

Evidence support:

  

In vivo/vitro assay	In vitro assay and in vivo assay (Mouse)
Low-throughput method	qRT-PCR
High-throughput method	RNA footprint;High-throughput sequencing of RNA isolated by cross-linking immunoprecipitation (HITS-CLIP)
Tissue/Cell	Liver
Description of experimental evidence	The mRNA was detected by HITS-CLIP and RNA footprint in mouse liver, which can communicate with other mRNAs by shared common microRNA regulatory elements.

Orthologues:

  

Human	ENSG00000221983
Chimpanzee	ENSPTRG00000010713
Drosophila	FBgn0003941
Zebrafish	ENSDARG00000041435

References:

  

PMID

23597149

Description

We incorporated RNA-seq quantification of total mRNA to identify expression-weighted Ago footprints, and developed a microRNA regulatory element (MRE) prediction algorithm that represents a greater than 20-fold refinement over computational methods alone. These high confidence MREs were used to generate candidate 'competing endogenous RNA' (ceRNA) networks.The data were collected from supplemently tables.

Related Subcelluar Localization:

  

Subcelluar Localization	RLID	Link to RNALocate
Exosome	RLID00006212	Link to RNALocate
Dendrite	RLID00006213	Link to RNALocate

Related Interactions:

  

  

   Notes: You can browse the related interactions in RNAinter by click the above link (since the interaction entries are too much to show here).