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Detail Information


Basic information:


Untranslated mRNA: Sponge mRNA

Related IDs cncRNA ID CNC_M_002005
Name RB1
Gene ID 5925
Location Coordinate(Strand) 13:48303726-48599436(+)
Locus Sequence
Organism Homo sapiens

Evidence support:

  
In vivo/vitro assay In vitro assay
Low-throughput method Transfection assay;Western blotting;qRT-PCR;Luciferase assay;siRNA;Proliferation assay
High-throughput method /
Tissue/Cell SNB19 cell;SF188 cell
Description of experimental evidence The mRNA was detected by transfection assay, western blotting, qRT-PCR, luciferase assay, siRNA and proliferation assay in SNB19 cell and SF188 cell, which can act as a decoy for Pten-targeting microRNAs.

Orthologues:

  
Chimpanzee ENSPTRG00000005864  
Mouse ENSMUSG00000022105  
Drosophila FBgn0038390  
Zebrafish ENSDARG00000006782  

References:

  
PMID 22000015
Description These include 7,000 genes whose transcripts act as miR sponges and 148 genes that act through alternative, nonsponge interactions. Biochemical analyses in cell lines confirmed that this network regulates established drivers of tumor initiation and subtype implementation, including PTEN, PDGFRA, RB1, VEGFA, STAT3, and RUNX1, suggesting that these interactions mediate crosstalk between canonical oncogenic pathways. See Figure 5A for details.

Related Subcelluar Localization:

  
Subcelluar Localization RLID Link to RNALocate
Nucleus RLID00040193 Link to RNALocate
Cytoplasm RLID00040194 Link to RNALocate
chromatin RLID00095252 Link to RNALocate
nucleoplasm RLID00095253 Link to RNALocate
nucleus RLID00095254 Link to RNALocate
nucleus RLID00095255 Link to RNALocate
exosome RLID00095256 Link to RNALocate
Nucleus RLID00017893 Link to RNALocate

Related Diseases:

  
OMIM Phenotype Phenotype MIM number Link to OMIM
Bladder cancer, somatic OMIM:109800 Link to OMIM
Retinoblastoma OMIM:180200 Link to OMIM
Small cell cancer of the lung, somatic OMIM:182280 Link to OMIM
Osteosarcoma, somatic OMIM:259500 Link to OMIM

Related Interactions:

  

  

   Notes: You can browse the related interactions in RNAinter by click the above link (since the interaction entries are too much to show here).