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Detail Information


Basic information:


Untranslated mRNA: Sponge mRNA

Related IDs cncRNA ID CNC_M_002004
Name RAP1B
Gene ID 5908
Location Coordinate(Strand) 12:68610855-68671901(+)
Locus Sequence
Organism Homo sapiens

Evidence support:

  
In vivo/vitro assay In vitro assay
Low-throughput method Transfection assay;Western blotting;qRT-PCR;Luciferase assay;ChIP;MTT assay;Transwell assay
High-throughput method /
Tissue/Cell Colorectal tumor sample;HCT116 cell;HCT8 cell;LS174T cell;Lovo cell;Caco2 cell;SW480 cell
Description of experimental evidence The mRNA was detected by transfection assay, western blotting, qRT-PCR, luciferase assay, ChIP, MTT assay, transwell assay in colorectal tumor sample, HCT116 cell, HCT8 cell, LS174T cell, LOVO cell, Caco2 cell, SW480 cell, which can regulate tumor cell growth and motility properties by binding miR-139-5p, freeing mRNAs of IGF1R being repressed by miR-199a*.

Orthologues:

  
Chimpanzee ENSPTRG00000005197  
Mouse ENSMUSG00000052681  
Drosophila /
Zebrafish ENSDARG00000008867  

References:

  
PMID 24942287
Description The miR-139-5p target genes IGF1R, ROCK2 and RAP1B exert regulatory effects on the miR-139-5p expression level, relying on their ability to compete for miR-139-5p binding. These overexpressed target genes also regulate each others' protein levels through 3'-UTRs, thus regulating tumor cell growth and motility properties.

Related Subcelluar Localization:

  
Subcelluar Localization RLID Link to RNALocate
chromatin RLID00095173 Link to RNALocate
nucleolus RLID00095174 Link to RNALocate
nucleoplasm RLID00095175 Link to RNALocate
nucleus RLID00095176 Link to RNALocate
nucleus RLID00095177 Link to RNALocate
exosome RLID00095178 Link to RNALocate
Ribosome RLID00017875 Link to RNALocate
Ribosome RLID00017876 Link to RNALocate
Cytosol RLID00017877 Link to RNALocate

Related Interactions:

  

  

   Notes: You can browse the related interactions in RNAinter by click the above link (since the interaction entries are too much to show here).