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Detail Information


Basic information:


Untranslated mRNA: Sponge mRNA

Related IDs cncRNA ID CNC_M_001424
Name PTEN
Gene ID 5728
Location Coordinate(Strand) 10:87863625-87971930(+)
Locus Sequence
Organism Homo sapiens

Evidence support:

  
In vivo/vitro assay In vitro assay
Low-throughput method Transfection assay;Western blotting;qRT-PCR;Luciferase assay;siRNA;Proliferation assay
High-throughput method /
Tissue/Cell SNB19 cell;SF188 cell
Description of experimental evidence The mRNA was detected by transfection assay, western blotting, qRT-PCR, luciferase assay, siRNA and proliferation assay in SNB19 cell and SF188 cell, which can act as a decoy for Pten-targeting microRNAs.

Orthologues:

  
Chimpanzee ENSPTRG00000002719  
Mouse ENSMUSG00000013663  
Drosophila FBgn0026379  
Zebrafish ENSDARG00000071018   ENSDARG00000056623  

References:

  
PMID 22000015
Description These include 7,000 genes whose transcripts act as miR sponges and 148 genes that act through alternative, nonsponge interactions. Biochemical analyses in cell lines confirmed that this network regulates established drivers of tumor initiation and subtype implementation, including PTEN, PDGFRA, RB1, VEGFA, STAT3, and RUNX1, suggesting that these interactions mediate crosstalk between canonical oncogenic pathways. See Figure 5A for details.

Related Subcelluar Localization:

  
Subcelluar Localization RLID Link to RNALocate
Nucleus RLID00040078 Link to RNALocate
chromatin RLID00093208 Link to RNALocate
cytosol RLID00093209 Link to RNALocate
membrane RLID00093210 Link to RNALocate
nucleoplasm RLID00093211 Link to RNALocate
nucleus RLID00093212 Link to RNALocate
nucleus RLID00093213 Link to RNALocate
nucleus RLID00093214 Link to RNALocate
exosome RLID00093215 Link to RNALocate
Ribosome RLID00017289 Link to RNALocate
Cytosol RLID00017290 Link to RNALocate

Related Diseases:

  
OMIM Phenotype Phenotype MIM number Link to OMIM
Lhermitte-Duclos syndrome OMIM:158350 Link to OMIM
Cowden syndrome 1 OMIM:158350 Link to OMIM
Prostate cancer, somatic OMIM:176807 Link to OMIM
Macrocephaly/autism syndrome OMIM:605309 Link to OMIM
Glioma susceptibility 2 OMIM:613028 Link to OMIM
Meningioma OMIM:607174 Link to OMIM

Related Interactions:

  

  

   Notes: You can browse the related interactions in RNAinter by click the above link (since the interaction entries are too much to show here).