Basic information:

Untranslated mRNA: Sponge mRNA

Related IDs	cncRNA ID	CNC_M_001947
	Name	Cyp4f17
	Gene ID	208285
Location	Coordinate(Strand)	17:32506050-32530143(+)
Locus Sequence
Organism	Mus musculus

Evidence support:

  

In vivo/vitro assay	In vitro assay and in vivo assay (Mouse)
Low-throughput method	qRT-PCR
High-throughput method	RNA footprint;High-throughput sequencing of RNA isolated by cross-linking immunoprecipitation (HITS-CLIP)
Tissue/Cell	Liver
Description of experimental evidence	The mRNA was detected by HITS-CLIP and RNA footprint in mouse liver, which can communicate with other mRNAs by shared common microRNA regulatory elements.

Orthologues:

  

Human	ENSG00000186526
Chimpanzee	ENSPTRG00000010627
Drosophila	FBgn0014469   FBgn0015034   FBgn0015035   FBgn0033292   FBgn0005670   FBgn0036778   FBgn0035344   FBgn0031925   FBgn0023541   FBgn0011576   FBgn0015033   FBgn0015036   FBgn0015032   FBgn0030615   FBgn0034053   FBgn0031693   FBgn0031695   FBgn0031694   FBgn0033397   FBgn0015037   FBgn0033395
Zebrafish	/

References:

  

PMID

23597149

Description

We incorporated RNA-seq quantification of total mRNA to identify expression-weighted Ago footprints, and developed a microRNA regulatory element (MRE) prediction algorithm that represents a greater than 20-fold refinement over computational methods alone. These high confidence MREs were used to generate candidate 'competing endogenous RNA' (ceRNA) networks.The data were collected from supplemently tables.

Related Interactions:

  

  

   Notes: You can browse the related interactions in RNAinter by click the above link (since the interaction entries are too much to show here).