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Detail Information


Basic information:


Untranslated mRNA: Sponge mRNA

Related IDs cncRNA ID CNC_M_001929
Name Asb1
Gene ID 65247
Location Coordinate(Strand) 1:91540544-91559589(+)
Locus Sequence
Organism Mus musculus

Evidence support:

  
In vivo/vitro assay In vitro assay and in vivo assay (Mouse)
Low-throughput method qRT-PCR
High-throughput method RNA footprint;High-throughput sequencing of RNA isolated by cross-linking immunoprecipitation (HITS-CLIP)
Tissue/Cell Liver
Description of experimental evidence The mRNA was detected by HITS-CLIP and RNA footprint in mouse liver, which can communicate with other mRNAs by shared common microRNA regulatory elements.

Orthologues:

  
Human ENSG00000065802  
Chimpanzee ENSPTRG00000049853  
Drosophila /
Zebrafish ENSDARG00000026635  

References:

  
PMID 23597149
Description We incorporated RNA-seq quantification of total mRNA to identify expression-weighted Ago footprints, and developed a microRNA regulatory element (MRE) prediction algorithm that represents a greater than 20-fold refinement over computational methods alone. These high confidence MREs were used to generate candidate 'competing endogenous RNA' (ceRNA) networks.The data were collected from supplemently tables.

Related Interactions:

  

  

   Notes: You can browse the related interactions in RNAinter by click the above link (since the interaction entries are too much to show here).