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Detail Information
Basic information:
Translated ncRNA: lncRNA
| Related IDs | cncRNA ID | CNC_N_000084 | |
|---|---|---|---|
| Name | AFAP1-AS1 | ||
| Gene ID | ENSG00000272620 | ||
| Location | Coordinate(Strand) | 4:7754077-7778928(+) | |
| Locus Sequence | |||
| Organism | Homo sapiens | ||
Peptide information:
| Peptide | HIKPPSQPRPVQSQSKEPVFR | |
|---|---|---|
| Peptide length | 21 | |
Evidence support:
| In vivo/vitro assay | In vitro assay | |
|---|---|---|
| Low-throughput method | / | |
| High-throughput method | Multiple reaction monitoring (MRM) | |
| Tissue/Cell | MHCCLM3 cell;A549 cell;HBE cell;MHCC97H cell;H1299 cell;Hep3B cell | |
| Description of experimental evidence | The peptide was detected by MRM in human cell lines(A549 cell;H1299 cell;HBE cell;Hep3B cell;MHCC97H cell;MHCCLM3 cell). | |
Orthologues:
| Chimpanzee | / |
|---|---|
| Mouse | / |
| Drosophila | / |
| Zebrafish | / |
References:
| PMID | 31340039 |
|---|---|
| Description | With shotgun proteomics, 308 lncRNA-encoded new proteins were detected. A total of 207 unique peptides of these new proteins were verified by multiple reaction monitoring (MRM) and/or parallel reaction monitoring (PRM), and 10 new proteins were verified by immunoblotting. The data were collected from Supplementary tables. |
Related Subcelluar Localization:
| Subcelluar Localization | RLID | Link to RNALocate |
|---|---|---|
| chromatin | RLID00109818 | Link to RNALocate |
| cytosol | RLID00109819 | Link to RNALocate |
| nucleus | RLID00109820 | Link to RNALocate |
| nucleus | RLID00109821 | Link to RNALocate |
| exosome | RLID00109822 | Link to RNALocate |
| Cytosol | RLID00023912 | Link to RNALocate |
Related Diseases:
| Disease | MNDR ID | Link to MNDR |
|---|---|---|
| Tongue squamous cell carcinoma | MNDR-E-LNC-02918 | Link to MNDR |
| Oral squamous cell carcinoma | MNDR-E-LNC-02919 | Link to MNDR |
| Triple negative breast cancer | MNDR-E-LNC-02920 | Link to MNDR |
| Prostate cancer | MNDR-E-LNC-02921 | Link to MNDR |
| Gastric cancer | MNDR-E-LNC-02923 | Link to MNDR |
| Lung cancer | MNDR-E-LNC-02924 | Link to MNDR |
| Spinocerebellar ataxia type 3 | MNDR-E-LNC-02925 | Link to MNDR |
| Breast cancer | MNDR-E-LNC-02926 | Link to MNDR |
| Cancer | MNDR-E-LNC-02927 | Link to MNDR |
| Thyroid cancer | MNDR-E-LNC-02928 | Link to MNDR |
| Pancreatic cancer | MNDR-E-LNC-02929 | Link to MNDR |
| Colon cancer | MNDR-E-LNC-02930 | Link to MNDR |
| Ovarian cancer | MNDR-E-LNC-02931 | Link to MNDR |
| Laryngeal squamous cell cancer | MNDR-E-LNC-02932 | Link to MNDR |
| Glioma | MNDR-E-LNC-02933 | Link to MNDR |
| Gallbladder cancer | MNDR-E-LNC-02934 | Link to MNDR |
| Osteosarcoma | MNDR-E-LNC-02935 | Link to MNDR |
| Pancreatic ductal adenocarcinoma | MNDR-E-LNC-02936 | Link to MNDR |
| Esophagus squamous cell carcinoma | MNDR-E-LNC-02937 | Link to MNDR |
| Lung squamous cell carcinoma | MNDR-E-LNC-02938 | Link to MNDR |
| Non small cell lung cancer | MNDR-E-LNC-02939 | Link to MNDR |
| Lung adenocarcinoma | MNDR-E-LNC-02940 | Link to MNDR |
| Cervical cancer | MNDR-E-LNC-02941 | Link to MNDR |
| Clear cell renal cell carcinoma | MNDR-E-LNC-02942 | Link to MNDR |
| Esophagus adenocarcinoma | MNDR-E-LNC-02943 | Link to MNDR |
| Cholangiocarcinoma | MNDR-E-LNC-02944 | Link to MNDR |
| Esophageal cancer | MNDR-E-LNC-02945 | Link to MNDR |
| Hepatocarcinoma | MNDR-E-LNC-02946 | Link to MNDR |
| Retinoblastoma | MNDR-E-LNC-02947 | Link to MNDR |
| Colorectal cancer | MNDR-E-LNC-02948 | Link to MNDR |
| Nasopharyngeal carcinoma | MNDR-E-LNC-02949 | Link to MNDR |
| Esophageal squamous cell cancer | MNDR-E-LNC-02950 | Link to MNDR |
| Nasopharyngeal cancer | MNDR-E-LNC-02951 | Link to MNDR |
Related Interactions:
Notes: You can browse the related interactions in RNAinter by click the above link (since the interaction entries are too much to show here).